View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12145_high_7 (Length: 401)
Name: NF12145_high_7
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12145_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 37 - 388
Target Start/End: Original strand, 4749395 - 4749747
Alignment:
| Q |
37 |
gatttgatggagttgttgatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtc |
136 |
Q |
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| T |
4749395 |
gatttgatggagttgttgatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtc |
4749494 |
T |
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| Q |
137 |
atgaaagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgt |
236 |
Q |
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| T |
4749495 |
atgaaagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgt |
4749594 |
T |
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| Q |
237 |
ggcattttcaaaatttgttactg-nnnnnnnnnnaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgat |
335 |
Q |
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| T |
4749595 |
ggcattttcaaaatttgttactgtttttttttttaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgat |
4749694 |
T |
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| Q |
336 |
caaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
388 |
Q |
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| T |
4749695 |
caaaaaggacttacacatacggaaattaggcaaatgaaatatctttctcaggt |
4749747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 4757880 - 4758054
Alignment:
| Q |
41 |
tgatggagttgttgatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatga |
140 |
Q |
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| T |
4757880 |
tgatggatttattgatggaagtcaaagatgaagagggtaggatgttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatga |
4757979 |
T |
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| Q |
141 |
aagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggt |
215 |
Q |
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| T |
4757980 |
aagctctgctcatggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 4758195 - 4758293
Alignment:
| Q |
290 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
388 |
Q |
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| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggt |
4758293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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