View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12145_low_1 (Length: 709)
Name: NF12145_low_1
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12145_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 20 - 697
Target Start/End: Complemental strand, 54981055 - 54980372
Alignment:
| Q |
20 |
ggtccagaccagaatctagtgtggattgaaaacaacatgttttttgtttgcacgcatttgagagattatccctgcaggtgccataaaagataaaggtctg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54981055 |
ggtccagaccagaatctagtgtggattgaaaacaacatgttttttgtttgcatgcatttgagagattatccctgcaggtgccataaaagataaagatctg |
54980956 |
T |
|
| Q |
120 |
attttgtcccttaaatttggtctcgtcaactatgttttgtttagattcaccattgaagcaataaataattannnnnnnngcaccaaaaataactatatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54980955 |
attttgtcccttaaatttggtctcgtcaactatgttttgttttgattgaccattgaagcaataaataatt-ttttttttgcaccaaaaataactatatat |
54980857 |
T |
|
| Q |
220 |
agattnnnnnnnncatttattgtgatcaaaatttcaacaaatgtgaaaatagagtgactaaaaaattaccaacattgaattggtctaagtggtaactgta |
319 |
Q |
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| T |
54980856 |
agattaaaaaaaacatttattgtgatcaaaatttcaacaaatgtgaaaatagagtgactaaaaaattaccaacattgaattggtctaagtggtaactgta |
54980757 |
T |
|
| Q |
320 |
aggaatttagaaggccaagtctaa-------tgaactttatggaatctcatcagaaaacttgtttaaagacaaatccgatgaattaagggtaagcaaaga |
412 |
Q |
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|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54980756 |
aggaatttagaaggccaagtctaagagatgataaattttatggaatctcatcagaaaacttgtttaaagacaaatccaatgaattaagggtaagcaaaga |
54980657 |
T |
|
| Q |
413 |
atccataccagttgaaattacaccagaaatagagtttccggtaaggtttataagaaacacaagaacctatagaatcaggtagaacaccagaaagattgtt |
512 |
Q |
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| T |
54980656 |
atccataccagttgaaattacaccagaaatagagtttccagcaaggtttataagaaacacaagaacctatagaatcaggtagaacaccagaaagattgtt |
54980557 |
T |
|
| Q |
513 |
cttatacaaagtaagactagttagtttcttaaattttcctataccttctggcatgtgaccgaaaattttattcgaacttaactgaatcaataccaaagaa |
612 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54980556 |
cttatacaaagtaagactagttagtttcttcaattttcctataccttctggcatgtgaccgaaaattttattcgaacttaactgaatcaataccgaagaa |
54980457 |
T |
|
| Q |
613 |
gacgcttctgagatttccaaaggtaactcagctgagaatttattccaagttgagtttttctacacaataacaacatgttccacag |
697 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54980456 |
gaagcttctgagatttccaaaggtaactcagctgagaatttattccaagttgagtttttctacacaataacaacatgttccacag |
54980372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 346 - 652
Target Start/End: Complemental strand, 2399115 - 2398801
Alignment:
| Q |
346 |
aactttatggaatctcatcagaaaacttgtttaaagacaaatccgatgaattaagggtaagcaaagaatccataccagttgaaattacaccagaaataga |
445 |
Q |
| |
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||||| ||||||||||| |||||||||||||| ||||||| | | |||||||||||||| |||||||| | |||| ||||| |||||||||||||||||| |
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| T |
2399115 |
aacttgatggaatctcaccagaaaacttgtttgaagacaagttcaatgaattaagggtaggcaaagaaccaatactagttggaattacaccagaaataga |
2399016 |
T |
|
| Q |
446 |
gtttccggtaaggttta------taaga--aacacaagaacctatagaatcaggtagaacaccagaaagattgttcttatacaaagtaagactagttagt |
537 |
Q |
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||| | | | ||||| ||||| |||||||||||| |||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||| |
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| T |
2399015 |
attttcagctaagtttacttcattaagagaaacacaagaaccaatagaatcaggtagaataccagaaacattgttgttattcaaagtaagactagttagt |
2398916 |
T |
|
| Q |
538 |
ttcttaaattttcctataccttctggcatgtgaccgaaaattttattcgaacttaactgaatcaataccaaagaagacgcttctgagatttccaaaggta |
637 |
Q |
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||||| ||||| |||||| ||| || ||||||||| ||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| |||| |
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| T |
2398915 |
ttcttcaatttgcctatagtttccggtatgtgaccggaaattctattcgaacttaactgaattgaaaccaaagaactagcttctgagatttccattggta |
2398816 |
T |
|
| Q |
638 |
actcagctgagaatt |
652 |
Q |
| |
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||||| ||||||||| |
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| T |
2398815 |
actcacctgagaatt |
2398801 |
T |
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