View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12145_low_11 (Length: 307)
Name: NF12145_low_11
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12145_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 18094908 - 18095191
Alignment:
| Q |
16 |
gtttttgcctaaaaagtgtttaaataacagtaca--------taaatacatatataaattataagactcttccctcttcccttcttgccgtgttcatgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18094908 |
gtttttgcctaaaaagtgtttaaataacagtacaacaatacataaatacatatataaattataagactcttccctcttcc-ttcttgccgtgttcatgtt |
18095006 |
T |
|
| Q |
108 |
tgtcttcctcagcgcttctatggtaccttgaagataaagtaagctctatctccctcttcttctctaattacctttatccttcacgtaatttaattattat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18095007 |
tgtcttcctcagcgcttctatggtaccttgaagatatagtaagctctatctccctcttcttctctaattatctttatccttcacgtaatttaattattat |
18095106 |
T |
|
| Q |
208 |
gcttggtatctttattcatttagatttcttcagtacactcgtgtgtcataaaagtaagaaagatattggctaattttatgtctct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18095107 |
gcttggtatctttattcatttagatttcttcagtacactcgtgtgtcataaaagtaagaaagatattggctaattttatgtctct |
18095191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 37852513 - 37852796
Alignment:
| Q |
16 |
gtttttgcctaaaaagtgtttaaataacagtaca--------taaatacatatataaattataagactcttccctcttcccttcttgccgtgttcatgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37852513 |
gtttttgcctaaaaagtgtttaaataacagtacaacaatacataaatacatatataaattataagactcttccctcttcc-ttcttgccgtgttcatgtt |
37852611 |
T |
|
| Q |
108 |
tgtcttcctcagcgcttctatggtaccttgaagataaagtaagctctatctccctcttcttctctaattacctttatccttcacgtaatttaattattat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37852612 |
tgtcttcctcagcgcttctatggtaccttgaagatatagtaagctctatctccctcttcttctctaattatctttatccttcacgtaatttaattattat |
37852711 |
T |
|
| Q |
208 |
gcttggtatctttattcatttagatttcttcagtacactcgtgtgtcataaaagtaagaaagatattggctaattttatgtctct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37852712 |
gcttggtatctttattcatttagatttcttcagtacactcgtgtgtcataaaagtaagaaagatattggctaattttatgtctct |
37852796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University