View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12145_low_3 (Length: 437)
Name: NF12145_low_3
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12145_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 14202319 - 14201914
Alignment:
| Q |
15 |
tgctctaaatgtttttgcttctaaaaccctttgcttgttgaagattacacctttcagcatcgaatgttgaattataatatcatggtatgcagagccaaat |
114 |
Q |
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| T |
14202319 |
tgctctatatgttttagtttctaaaaccctttgcttgttgaagattacacctttcaggatcgaatgttgaattataatatcatggtatgcagagccaaat |
14202220 |
T |
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| Q |
115 |
tgtatactctcggttttgttgtaaaaaattattcctttactaataaacannnnnnnnaaatgatgtttctttgtttttaataattgtggaaaacagttat |
214 |
Q |
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| T |
14202219 |
tgtataccctcggttatgttgtaaaaaattattcctttactaataaacattttttttaaatgatgtttctttgtttttaataattgtggaaaacggttat |
14202120 |
T |
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| Q |
215 |
agtttcattttgaaaattacctatatagaaattctagtattca-tgggccaccaaagtgtttcttggatcacaactttgtagactattgtttgtaatgca |
313 |
Q |
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| T |
14202119 |
agtttcattttgaaaattacctttacagaaattctagtattcagtgggccaccaaagtgttgcttggatcacaactttggtgacgattgtttgtaatgca |
14202020 |
T |
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| Q |
314 |
tttaattgatcttggttgttttctctggtaacatgcaagatatccatattttaaccatttttgtagttaagattcatgctcctcgggcacctcgtatcaa |
413 |
Q |
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| T |
14202019 |
ttttattaatcttggtt---ttctctggtaacatgcaagatatccatattttaaccatttttgtagttaagattcatgctcctctggcacctcgtatcaa |
14201923 |
T |
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| Q |
414 |
ggaagtttt |
422 |
Q |
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| T |
14201922 |
ggaagtttt |
14201914 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 38878549 - 38878612
Alignment:
| Q |
172 |
aaatgatgtttctttgtttttaataattgtggaaaacagttatagtttcattttgaaaattacc |
235 |
Q |
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| T |
38878549 |
aaatgatgtttctttgtttctaataattgcggtaaatggtgatagtttcattttgaatattacc |
38878612 |
T |
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