View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12145_low_4 (Length: 433)

Name: NF12145_low_4
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12145_low_4
NF12145_low_4
[»] chr2 (2 HSPs)
chr2 (9-418)||(37299838-37300247)
chr2 (182-236)||(4931586-4931640)
[»] chr7 (3 HSPs)
chr7 (158-236)||(32910615-32910692)
chr7 (173-232)||(4088070-4088129)
chr7 (173-249)||(32910627-32910703)
[»] chr4 (4 HSPs)
chr4 (182-236)||(45121172-45121226)
chr4 (157-214)||(22664029-22664086)
chr4 (157-214)||(22668508-22668565)
chr4 (171-236)||(39269015-39269080)
[»] chr1 (4 HSPs)
chr1 (161-223)||(46170398-46170459)
chr1 (206-236)||(27542695-27542725)
chr1 (176-224)||(48508574-48508622)
chr1 (182-222)||(49110845-49110885)
[»] scaffold0024 (2 HSPs)
scaffold0024 (173-222)||(132627-132676)
scaffold0024 (177-217)||(142177-142217)
[»] chr5 (4 HSPs)
chr5 (173-224)||(6965343-6965394)
chr5 (157-230)||(29037064-29037136)
chr5 (172-224)||(29037079-29037131)
chr5 (176-236)||(29919368-29919428)
[»] chr8 (3 HSPs)
chr8 (182-236)||(26901486-26901540)
chr8 (173-222)||(26901498-26901547)
chr8 (200-236)||(16850678-16850714)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 37299838 - 37300247
Alignment:
Q  9 agcacagatgacaatagaaggaacatgagaggttacatcaaattaaagctacaacttaatcataatcaaaatgatatcactaacaactataaatatatag 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37299838 agcacaaatgacaatagaaggaacatgagaggttacatcaaattaaagctacaacttaatcataatcaaaatgatatcactaacaactataaatatatag 37299937  T
Q  109 tcttagaaggtgaagagaatatcttaattttagctcttactccctattgtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37299938 tcttagaaggtgaagagaatatcttaattttagctcttactccctattgtcctaaatataagctaaaaagtcgaatgtatttagttgaaatttgaaccaa 37300037  T
Q  209 atacatttgactttttatttatatttaaaacggaaggagtagcttttactattatctaaggaagtcaattcccgaaccttaatcctctcagtcctcagtt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37300038 atacatttgactttttatttatatttaaaacggaaggagtagcttttactattatctaaggaagtcaattcccgaaccttaatcctctcagtcctcagtt 37300137  T
Q  309 gatcgtcctgagaaggaaatcttgcaaggtgcgctcttgacttctccccgnnnnnnnnatataagcctaagttctctttgcctccacattatccaaaatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||    
T  37300138 gatcgtcctgagaaggaaatcttgcaaggtgcgctcttgacttctccccgttttttttatataagcctaagttctctttgcctcctcattatccaaaatg 37300237  T
Q  409 caatgctttt 418  Q
    ||||||||||    
T  37300238 caatgctttt 37300247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 4931586 - 4931640
Alignment:
Q  182 aatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaa 236  Q
    |||||||||  |||||||||||| ||||||||||||||||||| |||||||||||    
T  4931586 aatgtatttgatttaaatttgaatcaaatacatttgactttttgtttatatttaa 4931640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 32910692 - 32910615
Alignment:
Q  158 tcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaa 236  Q
    |||||||||||| | |||||||| ||| |||||  |||||||||| |||||||||||||||||||||  ||||||||||    
T  32910692 tcttaaatataatc-aaaaagtcaaatatatttgatttaaatttggaccaaatacatttgacttttttattatatttaa 32910615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 4088070 - 4088129
Alignment:
Q  173 aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttttatttatat 232  Q
    |||| ||| |||||||||| || ||||||||| |||||| |||||||| |||||||||||    
T  4088070 aaaaggtcaaatgtatttaattaaaatttgaatcaaatatatttgactatttatttatat 4088129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 32910627 - 32910703
Alignment:
Q  173 aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaaaacggaaggagta 249  Q
    |||||||| ||||||||| ||  |||||| || |||||| ||||||||||||  |||||||||| | ||| ||||||    
T  32910627 aaaaagtcaaatgtatttggtccaaatttaaatcaaatatatttgactttttgattatatttaagatggagggagta 32910703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 45121172 - 45121226
Alignment:
Q  182 aatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaa 236  Q
    |||||||||  |||||||||| || |||||||||||||||||| |||||||||||    
T  45121172 aatgtatttgatttaaatttggactaaatacatttgactttttgtttatatttaa 45121226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 22664029 - 22664086
Alignment:
Q  157 gtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacat 214  Q
    |||| |||||||||| ||||||||  |||||||||||| ||||||| |||||||||||    
T  22664029 gtctcaaatataagcaaaaaagtcttatgtatttagttcaaatttggaccaaatacat 22664086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 22668508 - 22668565
Alignment:
Q  157 gtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacat 214  Q
    |||| |||||||||  ||||||||  |||||||||||| ||||||| |||||||||||    
T  22668508 gtctcaaatataaggaaaaaagtcttatgtatttagttcaaatttggaccaaatacat 22668565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 39269080 - 39269015
Alignment:
Q  171 ctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaa 236  Q
    ||||||| || |||||||||  | |||||||  ||||||||| ||||||||||||| |||||||||    
T  39269080 ctaaaaaatcaaatgtattttatctaaatttagaccaaatacttttgactttttatctatatttaa 39269015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 46170398 - 46170459
Alignment:
Q  161 taaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttt 223  Q
    |||||||||| ||||||||| |||||||||| | |||||||| ||||||||||||| ||||||    
T  46170398 taaatataag-taaaaagtcaaatgtatttaatctaaatttggaccaaatacattttactttt 46170459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 27542695 - 27542725
Alignment:
Q  206 caaatacatttgactttttatttatatttaa 236  Q
    |||||||||||||||||||||||||||||||    
T  27542695 caaatacatttgactttttatttatatttaa 27542725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 48508574 - 48508622
Alignment:
Q  176 aagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt 224  Q
    ||||| |||||||||||| |||||||||| |||||| ||||||| ||||    
T  48508574 aagtcaaatgtatttagtataaatttgaatcaaatatatttgacatttt 48508622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 49110885 - 49110845
Alignment:
Q  182 aatgtatttagtttaaatttgaaccaaatacatttgacttt 222  Q
    ||||| |||||||||||||||||| |||| |||||||||||    
T  49110885 aatgtttttagtttaaatttgaactaaatgcatttgacttt 49110845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 132676 - 132627
Alignment:
Q  173 aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttt 222  Q
    |||||||| ||||||||| ||||||| ||| |||||||||||||||||||    
T  132676 aaaaagtcaaatgtatttggtttaaagttggaccaaatacatttgacttt 132627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 142217 - 142177
Alignment:
Q  177 agtcgaatgtatttagtttaaatttgaaccaaatacatttg 217  Q
    |||| ||||||||| ||||||||||||| ||||||||||||    
T  142217 agtcaaatgtatttggtttaaatttgaatcaaatacatttg 142177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 6965343 - 6965394
Alignment:
Q  173 aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt 224  Q
    |||||||| |||||||||| || ||||||| ||||||||||||||| |||||    
T  6965343 aaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 6965394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 29037064 - 29037136
Alignment:
Q  157 gtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttttatttat 230  Q
    ||||||| ||||||| |||||||| ||||||||| ||| | ||||| |||| ||| ||| ||||||||||||||    
T  29037064 gtcttaagtataagc-aaaaagtcaaatgtatttggttcatatttggaccagatatattcgactttttatttat 29037136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 29037131 - 29037079
Alignment:
Q  172 taaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt 224  Q
    ||||||||||||| ||| | ||  |||| ||||||||||||||||||||||||    
T  29037131 taaaaagtcgaatatatctggtccaaatatgaaccaaatacatttgacttttt 29037079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 29919368 - 29919428
Alignment:
Q  176 aagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaa 236  Q
    ||||| |||||||||  | ||||| |||||||||||||||| |||||||| ||| ||||||    
T  29919368 aagtcaaatgtatttgttctaaatatgaaccaaatacattttactttttacttaaatttaa 29919428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 26901540 - 26901486
Alignment:
Q  182 aatgtatttagtttaaatttgaaccaaatacatttgactttttatttatatttaa 236  Q
    ||||||||| ||| |||||| || ||||||||||||||||||| | |||||||||    
T  26901540 aatgtattttgttcaaatttaaatcaaatacatttgactttttgtatatatttaa 26901486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 26901498 - 26901547
Alignment:
Q  173 aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttt 222  Q
    |||||||| |||||||||  ||||||||||||| |||||||||| |||||    
T  26901498 aaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaacttt 26901547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 16850678 - 16850714
Alignment:
Q  200 ttgaaccaaatacatttgactttttatttatatttaa 236  Q
    |||||||||||||||||||||||||  ||||||||||    
T  16850678 ttgaaccaaatacatttgactttttgcttatatttaa 16850714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University