View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12145_low_9 (Length: 376)
Name: NF12145_low_9
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12145_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 9687602 - 9687253
Alignment:
| Q |
20 |
ctgagaagattagggacaagctttgttacaaaggtggaggttctatcaagagcattgaaatagtggatccgccaaatcccaaagtacctgagcccgtgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| |
|
|
| T |
9687602 |
ctgagaagattagggacaagctttgttacaaaggtggaggttctatcaagagcattgaaatagtggatccgccaaagcccaaagcagctgagcccgagaa |
9687503 |
T |
|
| Q |
120 |
gaaaaaggaagccgagaagcccaagcccgctgagcccgagaagaaaaaggaaccggagaagaaaaaggaaggtgataagcccaagcctgctaaagaggcc |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9687502 |
gaaaaaggaagccgagaagcccaagtccgctgagcccgagaagaaaaaggaaccggagaagaaaaaggaaggtgataagcccaagcccgctaaagaggcc |
9687403 |
T |
|
| Q |
220 |
gagaagcccaaggcagctgacccggagaagaaagttacttttgtttctgtagtcaaagattcagataaacctaaagctgcggaaaagcccaagcccaagc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9687402 |
gagaagcccaaggcagctgacccggagaagaaagttacttttgtttctgtagtcaaagattcagataaacctaaagatgcggaaaagcccaagcccaagc |
9687303 |
T |
|
| Q |
320 |
ctgaggctgagaagcccaaagacaagcctgtaccaactgctatgcctatg |
369 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9687302 |
ctgaagctgagaagcccaaagacaagcctgcaccaactgctatgcctatg |
9687253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University