View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_high_2 (Length: 521)
Name: NF12146_high_2
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 65 - 513
Target Start/End: Original strand, 47982497 - 47982946
Alignment:
| Q |
65 |
cattcattattgatatagttccaaatcagcatta-aaaaattggaagatgataatggtatgtttcagtttggtttttataacattgatttaaagatgtca |
163 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47982497 |
cattcattattgatattgttccaaatcagcattagaaaaattggaagatgataatggtatgtttcagtttggtttttataacattgatttaaagatgtca |
47982596 |
T |
|
| Q |
164 |
acgcaagttaagctactatttttggatatatcaaatcctctactgcgctgcacacaatcttatggaggagagtcattgtatggtgtatctgagttcatta |
263 |
Q |
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| T |
47982597 |
acgcaagttaacctactatttttggatatatcaaatcctctactgcgctgcacacaatctgttggaggagagtcattgtatggtgtatctgagttcatta |
47982696 |
T |
|
| Q |
264 |
tttttaccttttacaggcatatgaagatttaaataattccaaaaaagctatgttgattttatatatttgattataagaaaacttaacttattgaaataca |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47982697 |
tttttaccttttacaggcatatgaagatttaaataattccaaaaaagctatgttgattttatatatttgattataagaaaacttaacttattgaaataca |
47982796 |
T |
|
| Q |
364 |
atgtggttttactcatttcaattttagactctaaacaaattctccacagtagaaattgcagtagtttgtgtaatgtttactgtcattgttgaatggattt |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47982797 |
atgtggttttactcatttcaattttagactctaaacaaattctccacagtagaaattgcagtagtttgtgtaatgtttactgtcattgttgaatggattt |
47982896 |
T |
|
| Q |
464 |
aatgtttctttatatgtttctctaccattatagttttcattgttcttctc |
513 |
Q |
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| T |
47982897 |
aatgtttctttatatgtttctctaccattatagttttcattgttcttctc |
47982946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 47992625 - 47992684
Alignment:
| Q |
336 |
ataagaaaacttaacttattgaaatacaa--tgtggttttactcatttcaattttagact |
393 |
Q |
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| T |
47992625 |
ataagaaaacttatcttatttaaatacaatttgttttttttctcatttcaattttagact |
47992684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 62 - 513
Target Start/End: Original strand, 38355378 - 38355822
Alignment:
| Q |
62 |
atgcattcattattgatatagttccaaatcagcattaaaaaatt-ggaagatgataatggtatgtttcagtttggtttttataa-cattgatttaaagat |
159 |
Q |
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|||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||| | | || ||||||||||||||||||| |||||| ||||| |
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| T |
38355378 |
atgcattcatcattgatattgttccaaatcagcattagaaaatttggaagatgatagta-tctgattcagtttggtttttataaacattga----aagat |
38355472 |
T |
|
| Q |
160 |
gtcaacgcaagttaagctactatttttggatatatcaaatcctctactgcgctgcacacaatcttatggaggagagtcattgtatggtgtatctgagttc |
259 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||| | |||||||||||||||||||||| |
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| T |
38355473 |
gtcgacgcaagttgagctactatttttggatatatcaaatcctctactgctttgcacacagtctgttggagtagaat-attgtatggtgtatctgagttc |
38355571 |
T |
|
| Q |
260 |
attatttttaccttttacaggcatatgaagatttaaataattccaaaaaagctatgttgattttatatatttgattataagaaaacttaacttattgaaa |
359 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38355572 |
attatttttaccctttacagtcatatgaagatttaaataattctaaaaaagctatgttgattttatatatttgattataagaaaactt-acttattgaaa |
38355670 |
T |
|
| Q |
360 |
tacaatgtggttttactcatttcaattttagactctaaacaaattctccacagtagaaattgcagtagtttgtgtaatgtttactgtcattgttgaatgg |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
38355671 |
tacaatgtggttttactcatttcaattttagactctaaacaaattctccttagtagaaattgaagtactttgcgtaatgtttactgtcattgttgaatga |
38355770 |
T |
|
| Q |
460 |
atttaatgtttctttatatgtttctctaccattatagttttcattgttcttctc |
513 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
38355771 |
atttaatgtt--tttatatgtttctctgtcattatagttttcattgtttttctc |
38355822 |
T |
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