View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_high_5 (Length: 427)
Name: NF12146_high_5
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 42144740 - 42144350
Alignment:
| Q |
19 |
tatatgattttcaaccagatatcagtgcagttgtgcagaattgtctgcaaaaaattacgtaattgtctttggcgttactctcatattcattccattagag |
118 |
Q |
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| T |
42144740 |
tatatgattttcaaccagatttcagtgcagttgtgcagaattgtctgcaaaaaattacgtaattgtctttggcgttactctcatattcattccattagag |
42144641 |
T |
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| Q |
119 |
agggggtccctcatagtttctttgttgaccataggtaaattcagtactatgtaaaatattcagaatgaaaaaatcatgcatgaaattggaaataatattt |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144640 |
agggggtccctcatagtttctt-gttgaccataggtgaattcagtactatgtaatatattcagaatgaaaaaatcatgcatgaaattggaaataatattt |
42144542 |
T |
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| Q |
219 |
tacagataattaacaaattgacaagactattagattatgttagaacaaaatataaaacacatactacttgttgtaatgtaacacctaaaaggttaattaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144541 |
tacagataattaacaaattgacaagactattagattatgttagaacaaaatataaaacacatactacttgttgtaatgtaacacctaaaaggttaattaa |
42144442 |
T |
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| Q |
319 |
aagcccaagttacacttttcataatcaaattaaaaaactaagtactagacccaaaatcataaaaatccaccagaaacaactagtagcacagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144441 |
aagcccaagttacacttttcataatcaaattaaaaaactaagtactagacccaaaatcataaaaatccaccagaaacaactagtagcacagc |
42144350 |
T |
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