View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_high_6 (Length: 414)
Name: NF12146_high_6
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 19172469 - 19172084
Alignment:
| Q |
11 |
cacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatctt |
110 |
Q |
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| T |
19172469 |
cacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatctt |
19172370 |
T |
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| Q |
111 |
gctcgttcttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcat |
210 |
Q |
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| T |
19172369 |
gctcgttcttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcgt |
19172270 |
T |
|
| Q |
211 |
ggaggaatccatcagaaaccctaagaacacgtatggaacaaatagagtgcggtttgaagtccatcgttccaacacttaacgataggcttacacgcgcgga |
310 |
Q |
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| T |
19172269 |
ggaggaatccatcagaaaccctaataacacgtatggagcaaatagagtgcggtttgaagtccatcgttccaacgcttaacgataggcttacacgcgcgga |
19172170 |
T |
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| Q |
311 |
aggctgtttcgttgaacacgttgttggtgactggttttcgtgtaaagatcgcggtgataataaagggaaagctgttttgggaaatg |
396 |
Q |
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| T |
19172169 |
aggctgtttcattaaaaacgttgttggtgactggttttcgtgtaaagatcgcggtgataataaagggaaagttgttttgggaaatg |
19172084 |
T |
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