View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12146_low_1 (Length: 610)

Name: NF12146_low_1
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12146_low_1
NF12146_low_1
[»] chr1 (3 HSPs)
chr1 (10-610)||(48536729-48537316)
chr1 (520-568)||(2194477-2194525)
chr1 (527-568)||(3887751-3887791)
[»] chr5 (4 HSPs)
chr5 (523-559)||(38105022-38105058)
chr5 (523-559)||(26796338-26796374)
chr5 (523-559)||(26799856-26799892)
chr5 (523-559)||(26807406-26807442)
[»] chr7 (2 HSPs)
chr7 (521-559)||(425980-426018)
chr7 (520-560)||(28210318-28210357)
[»] chr2 (2 HSPs)
chr2 (528-566)||(39621864-39621902)
chr2 (526-559)||(12140444-12140477)
[»] chr8 (1 HSPs)
chr8 (522-559)||(4389818-4389855)
[»] chr4 (3 HSPs)
chr4 (522-559)||(17223293-17223330)
chr4 (523-559)||(19039656-19039692)
chr4 (523-559)||(47399409-47399445)
[»] chr3 (5 HSPs)
chr3 (523-559)||(9995850-9995886)
chr3 (523-559)||(10131536-10131572)
chr3 (523-559)||(10216867-10216903)
chr3 (523-559)||(10220386-10220422)
chr3 (523-559)||(46434751-46434787)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 10 - 610
Target Start/End: Complemental strand, 48537316 - 48536729
Alignment:
Q  10 gcataggagaatcatggccaatgacgaaagaaagagcctattttgagtcattggcattgaaagaagagggtaaattgagtcctgatcatgttcctgaagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48537316 gcataggagaatcatggccaatgacgaaagaaagagcctattttgagtcattggcattgaaagaagagggtaaattgagtcctgatcatgttcctgaagt 48537217  T
Q  110 gtatcattttgatcgtactatgtccttgattggtatgcgttatttggagccaccacatataattctcagaaaagggttgattgctggtgttgagtatcct 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48537216 gtatcattttgatcgtactatgtctttgattggtatgcgttatttggagccaccacatataattctcagaaaagggttgattgctggtgttgagtatcct 48537117  T
Q  210 ttgttggctgatcacatgtctgattttatggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaact 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48537116 ttgttggctgatcacatgtctgattttatggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaact 48537017  T
Q  310 ttcccttttcaccttttcataccctcaacatatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48537016 ttcccttttcaccttttcataccctcaacatatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatc 48536917  T
Q  410 gtactttccctgaaattcaattgagcttgtttttgtattggaaacattggttccttgatgtgtagtcttgatgtgtagttgtcaattgtctgtgatttgc 509  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  48536916 gtactttccctgaaattcaattgagcttatttttgtattggaaacattggttccttgatgtg-------------tagttgtcaattgtctgtgatttgc 48536830  T
Q  510 tttcttcttattaggccctgtttggataaacaactcattttgcagcttatgtataagctccctctttctataacaaaaaagctattttcataagttctcc 609  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48536829 tttcttcttattaggcgctgtttggataaacaactcattttgcagcttatgtataagctccctctttctataacaaaaaagctattttcataagttctcc 48536730  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 2194525 - 2194477
Alignment:
Q  520 ttaggccctgtttggataaacaactcattttgcagcttatgtataagct 568  Q
    |||||||||||||||||||||| || | ||||||||||||| |||||||    
T  2194525 ttaggccctgtttggataaacagcttaatttgcagcttatgcataagct 2194477  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 3887791 - 3887751
Alignment:
Q  527 ctgtttggataaacaactcattttgcagcttatgtataagct 568  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  3887791 ctgtttggataaacaacttattt-gcagcttatgtataagct 3887751  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 559
Target Start/End: Complemental strand, 38105058 - 38105022
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38105058 ggccctgtttggataaacaacttattttgcagcttat 38105022  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 26796338 - 26796374
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  26796338 ggccctgtttggataaacaacttattttgcaccttat 26796374  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 26799856 - 26799892
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  26799856 ggccctgtttggataaacaacttattttgcaccttat 26799892  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 26807406 - 26807442
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  26807406 ggccctgtttggataaacaacttattttgcaccttat 26807442  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 559
Target Start/End: Complemental strand, 426018 - 425980
Alignment:
Q  521 taggccctgtttggataaacaactcattttgcagcttat 559  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  426018 taggccctgtttggataaataacttattttgcagcttat 425980  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 560
Target Start/End: Original strand, 28210318 - 28210357
Alignment:
Q  520 ttaggccctgtttggataaacaactcattttgcagcttatg 560  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  28210318 ttaggccctgtttggataaacaactta-tttgcagcttatg 28210357  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 566
Target Start/End: Original strand, 39621864 - 39621902
Alignment:
Q  528 tgtttggataaacaactcattttgcagcttatgtataag 566  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  39621864 tgtttggataaacaacttattttgcagcttatgaataag 39621902  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 559
Target Start/End: Original strand, 12140444 - 12140477
Alignment:
Q  526 cctgtttggataaacaactcattttgcagcttat 559  Q
    ||||||||||||||||||| ||||||||||||||    
T  12140444 cctgtttggataaacaacttattttgcagcttat 12140477  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 559
Target Start/End: Original strand, 4389818 - 4389855
Alignment:
Q  522 aggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  4389818 aggccctgtttggataaataacttattttgcagcttat 4389855  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 559
Target Start/End: Complemental strand, 17223330 - 17223293
Alignment:
Q  522 aggccctgtttggataaacaactcattttgcagcttat 559  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  17223330 aggccctgtttagataaacaactcattttgcaacttat 17223293  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 19039656 - 19039692
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| | ||||||||||||    
T  19039656 ggccctgtttggataaacaacttaatttgcagcttat 19039692  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 47399409 - 47399445
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| | ||||||||||||    
T  47399409 ggccctgtttggataaacaacttagtttgcagcttat 47399445  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 9995850 - 9995886
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  9995850 ggccctgtttggataaacaacttattttgcaccttat 9995886  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 10131536 - 10131572
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  10131536 ggccctgtttggataaacaacttattttgcatcttat 10131572  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 10216867 - 10216903
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  10216867 ggccctgtttggataaacaacttattttgcaccttat 10216903  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 10220386 - 10220422
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||||||||||||||||||||| |||||||| |||||    
T  10220386 ggccctgtttggataaacaacttattttgcaccttat 10220422  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Complemental strand, 46434787 - 46434751
Alignment:
Q  523 ggccctgtttggataaacaactcattttgcagcttat 559  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  46434787 ggccttgtttggataaacaacttattttgcagcttat 46434751  T

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