View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_13 (Length: 390)
Name: NF12146_low_13
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 29883043 - 29882689
Alignment:
| Q |
18 |
cacagaccaattatacaatttgcccaaataataaacaaaggcaagtggcaactttgatgatgatgcttctatgatattcctctgcacatgttcaggaaaa |
117 |
Q |
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| T |
29883043 |
cacagaccaattatacaatttgcccaaataataaacaaaggcaagtggcaactttgatgatgatgcttctatgatattcctctgcacatgttcaggaaaa |
29882944 |
T |
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| Q |
118 |
cataggtatcggatataattcgagatgctcaattctataacatggataaattctgtgaccatattgttcaaaagctatgtatgacttttctgactcagac |
217 |
Q |
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| T |
29882943 |
cataggtatcggatataattcgagatgctcaattctataacatggataaattctgtgaccatattgttcaaaagctatgtatgacttttctgactcagac |
29882844 |
T |
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| Q |
218 |
gaatgtttcaacatttttctcaaattaaagaataaaaatatttgatgatgatccttctttgcaaatttgaactttacatttggatatggataatccttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29882843 |
gaatgtttcaacatttttctcaaattaaagaataaaaatatttgatgatgatccctctttgcaaatttgaactttacatttggatatggataatccttca |
29882744 |
T |
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| Q |
318 |
ttttcccacgtatcatgaagaagaagcttctctcaattaaatgtgatgtaatgac |
372 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29882743 |
tttttccacgtatcatgaagaagaagcttctctcaattaaatgtgatgtaatgac |
29882689 |
T |
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