View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_14 (Length: 373)
Name: NF12146_low_14
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 108 - 365
Target Start/End: Original strand, 8022184 - 8022441
Alignment:
| Q |
108 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
207 |
Q |
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| T |
8022184 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
8022283 |
T |
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| Q |
208 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttaacaaaccaacca |
307 |
Q |
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| T |
8022284 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttagcaaaccaacca |
8022383 |
T |
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| Q |
308 |
aaacatgttcagcagaagcatgttttgtgcttccaacaccctgtttctctgcttctcc |
365 |
Q |
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| T |
8022384 |
aaacatgttcagcagaagcatgttttgtgcttccaacaccctgtttctctgattctcc |
8022441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8022078 - 8022131
Alignment:
| Q |
1 |
tacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
54 |
Q |
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| T |
8022078 |
tacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
8022131 |
T |
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