View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_15 (Length: 321)
Name: NF12146_low_15
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 4133427 - 4133715
Alignment:
| Q |
19 |
gctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgatgttattg |
118 |
Q |
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| T |
4133427 |
gctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgttgttattg |
4133526 |
T |
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| Q |
119 |
ttgatttaagtatggttaccaaaaatcgagttattttttatacagggccatttctaattttattaccaaataaaataaagatgagggaatgaggagcaag |
218 |
Q |
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| T |
4133527 |
ttgatttaagtatggttactaaaaattgagttattttttatacagggccatttctaattttattaccaaataaaataaagatgagggaatgaggagcaag |
4133626 |
T |
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| Q |
219 |
taatgtagctacctacctggatggtaacttcatcttcttcggcttcagacaggaagcatctccacctcattcaccggttgaggtgccac |
307 |
Q |
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| T |
4133627 |
taatgtagctacctacctggatggtaacttcatcttcttcggcttcagacaggaagcatctccacctcattcaccggttgaggtgccac |
4133715 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 41080509 - 41080419
Alignment:
| Q |
31 |
gcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgatgttattgttgatt |
124 |
Q |
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| T |
41080509 |
gcagaggctgaatacagggccattgctgccctcacatctgagttattgt---gacatagacaattactcacagctttagatgttattgttgatt |
41080419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 41091871 - 41091808
Alignment:
| Q |
19 |
gctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggc |
82 |
Q |
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|||||||||| |||||||||||||| | |||||| ||||| |||||||||||||| |||||| |
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| T |
41091871 |
gctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagttactgtggc |
41091808 |
T |
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