View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12146_low_2 (Length: 531)

Name: NF12146_low_2
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12146_low_2
NF12146_low_2
[»] chr1 (13 HSPs)
chr1 (18-521)||(35423699-35424217)
chr1 (18-85)||(13941329-13941396)
chr1 (18-69)||(27745183-27745234)
chr1 (18-72)||(2903045-2903099)
chr1 (18-72)||(9768827-9768881)
chr1 (18-69)||(11405482-11405533)
chr1 (18-72)||(18003839-18003893)
chr1 (18-72)||(50199494-50199548)
chr1 (18-84)||(52961100-52961166)
chr1 (23-68)||(23758276-23758321)
chr1 (18-71)||(44949524-44949577)
chr1 (36-72)||(17643044-17643080)
chr1 (48-80)||(18976018-18976050)
[»] chr7 (12 HSPs)
chr7 (18-84)||(24427374-24427440)
chr7 (18-84)||(23799311-23799377)
chr7 (18-69)||(45198116-45198167)
chr7 (18-72)||(11808061-11808115)
chr7 (18-72)||(35195866-35195920)
chr7 (18-69)||(24304301-24304352)
chr7 (18-85)||(42181495-42181562)
chr7 (18-72)||(1513510-1513564)
chr7 (18-72)||(10020487-10020541)
chr7 (18-84)||(43635599-43635665)
chr7 (27-72)||(5773152-5773197)
chr7 (23-84)||(7465477-7465538)
[»] chr2 (12 HSPs)
chr2 (18-72)||(14307712-14307766)
chr2 (24-96)||(917315-917387)
chr2 (26-70)||(18065279-18065323)
chr2 (25-73)||(37123208-37123256)
chr2 (18-97)||(407477-407555)
chr2 (18-69)||(7086279-7086330)
chr2 (18-69)||(11133102-11133153)
chr2 (18-72)||(25463284-25463338)
chr2 (18-72)||(40471176-40471230)
chr2 (18-68)||(41699129-41699179)
chr2 (28-69)||(27495564-27495605)
chr2 (20-61)||(33816408-33816449)
[»] chr4 (15 HSPs)
chr4 (18-68)||(35122071-35122121)
chr4 (25-76)||(30032833-30032884)
chr4 (18-61)||(43115302-43115345)
chr4 (18-72)||(1589175-1589229)
chr4 (18-84)||(4419704-4419770)
chr4 (18-69)||(9084785-9084836)
chr4 (18-69)||(31480297-31480348)
chr4 (18-69)||(36008301-36008352)
chr4 (18-69)||(36954163-36954214)
chr4 (18-69)||(37032197-37032248)
chr4 (25-72)||(42432031-42432078)
chr4 (26-72)||(36045853-36045899)
chr4 (18-72)||(49039463-49039517)
chr4 (18-72)||(55967601-55967655)
chr4 (23-63)||(43905745-43905785)
[»] chr8 (4 HSPs)
chr8 (18-69)||(30542790-30542841)
chr8 (33-72)||(22847295-22847334)
chr8 (18-69)||(42688082-42688133)
chr8 (24-72)||(26657879-26657927)
[»] chr6 (6 HSPs)
chr6 (18-73)||(1488110-1488165)
chr6 (18-85)||(30833027-30833094)
chr6 (18-84)||(8176007-8176073)
chr6 (18-84)||(22730720-22730786)
chr6 (18-72)||(34524898-34524952)
chr6 (18-66)||(18631501-18631549)
[»] chr3 (15 HSPs)
chr3 (18-72)||(3973325-3973379)
chr3 (18-72)||(3996497-3996551)
chr3 (18-71)||(19137643-19137696)
chr3 (17-72)||(3993724-3993779)
chr3 (18-85)||(4045652-4045719)
chr3 (18-69)||(32508812-32508863)
chr3 (18-72)||(4010036-4010090)
chr3 (18-84)||(24160546-24160612)
chr3 (18-72)||(27119299-27119353)
chr3 (18-84)||(28951877-28951943)
chr3 (23-72)||(16874213-16874262)
chr3 (25-73)||(794033-794081)
chr3 (24-72)||(3461748-3461796)
chr3 (18-58)||(8175797-8175837)
chr3 (18-94)||(34407108-34407184)
[»] chr5 (11 HSPs)
chr5 (24-84)||(36741991-36742051)
chr5 (18-61)||(2029146-2029189)
chr5 (18-69)||(3102145-3102196)
chr5 (18-69)||(6806658-6806709)
chr5 (18-69)||(18872547-18872598)
chr5 (18-69)||(19982266-19982317)
chr5 (18-72)||(31556841-31556895)
chr5 (27-84)||(42553168-42553224)
chr5 (25-69)||(27440323-27440367)
chr5 (36-72)||(38040289-38040325)
chr5 (32-72)||(42781626-42781666)
[»] scaffold0219 (1 HSPs)
scaffold0219 (52-84)||(21016-21048)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 35424217 - 35423699
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaatcaagctcacgtttgatctgaagagtgaaaga 117  Q
    ||||||||||| | |||||||||||||||   || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  35424217 ataaatggggtatccggggttcgaatctcagcccatgcatataacaatgcatgtttttggcaactgaatcaagctcacgtttgatctgaagagtgaaaga 35424118  T
Q  118 gtatatagtttagtaaaaatataagacaatatcctgattaatatgatgatagttaaagaaaggcatcataaaaatatga-tttgagttttttcccttaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| | ||||     
T  35424117 gtatatagtttagtaaaaatataagacaatatcctgattaatatgatgatagttaaagaaaggcattataaaaatataaatttgagtttttttc-ttaac 35424019  T
Q  217 aattnnnnnnncacgtttatgaagaaaatttnnnnnnn--cacgttatctagtttgggataacttaaggtgacatgcaaatttaacatcttctg------ 308  Q
    ||||       |||||||||||| |||||||         |||||||||||||||||||||||||||| ||||||||||||||||||| |||||          
T  35424018 aattaaaaaaacacgtttatgaacaaaatttaaaaaaaaacacgttatctagtttgggataacttaag-tgacatgcaaatttaacattttctgtgggag 35423920  T
Q  309 --------gctgacagacacagagtgttgcattgcatacacagcttcaatcaatcaaggttggaatgaagactacaatggcttcaccttctctctccaaa 400  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423919 tttcagtggctgacagacacagagtgttgcattgcatacacagcttcaatcaatcaaggttggaatgaagactacaatggcttcaccttctctctccaaa 35423820  T
Q  401 ttctgctctttaacacccactctttcccaacatcacacccaatcattcccttccacaacttcactcagattcctccatactaccacttctaccaatttca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35423819 ttctgctctttaacacccactctttcccaacatcacacccaatcattcccttccacaacttcactcagattcccccatactaccacttctaccaatttca 35423720  T
Q  501 ataccatttttcttcacaaac 521  Q
    |||||||||||||||||||||    
T  35423719 ataccatttttcttcacaaac 35423699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 13941396 - 13941329
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaa 85  Q
    |||| |||||||| ||  ||||||| ||||| ||||||||||||||||||||||| ||| ||||||||    
T  13941396 ataagtggggtgtccgaagttcgaacctcgaaccctgcatataacaatgcatgtccttgccaactgaa 13941329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 27745234 - 27745183
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||||||| ||||||||||| | |||||||||||||||| |||||||    
T  27745234 ataaatggggtgtccggggttcgaaccccgatccctgcatataataatgcat 27745183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 2903045 - 2903099
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||||||||||||||| | ||| | |||||||||||||||||||||    
T  2903045 ataagtggggtgttcggggttcgaaccccgacctctgcatataacaatgcatgtc 2903099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 9768827 - 9768881
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||    
T  9768827 ataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtc 9768881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 11405533 - 11405482
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||| ||||||||||| | ||| ||||||||||||||||||||    
T  11405533 ataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcat 11405482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 18003893 - 18003839
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||||||||| ||||| | ||  |||||||||||||||||||||||    
T  18003893 ataagtggggtgttcggggctcgaaccccggcccctgcatataacaatgcatgtc 18003839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 50199494 - 50199548
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||| ||||||||||| | ||  |||||||||||||||||||||||    
T  50199494 ataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcatgtc 50199548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 52961100 - 52961166
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| ||||| || ||||||||||| | ||  ||||||||||||||||||||||| ||| |||||||    
T  52961100 ataagtggggcgtccggggttcgaaccccggcccctgcatataacaatgcatgtccttgccaactga 52961166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 23758276 - 23758321
Alignment:
Q  23 tggggtgttcggggttcgaatctcgatccctgcatataacaatgca 68  Q
    |||||||||||||||||||| ||| | |||||||||||| ||||||    
T  23758276 tggggtgttcggggttcgaacctcaacccctgcatataataatgca 23758321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 44949577 - 44949524
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgt 71  Q
    ||||||||||||||| ||||||||| | ||| || | |||||||||||||||||    
T  44949577 ataaatggggtgttcagggttcgaaccccgacccgtacatataacaatgcatgt 44949524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 17643044 - 17643080
Alignment:
Q  36 gttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||||||||  ||||||||||||||||||||||    
T  17643044 gttcgaatctcgactcctgcatataacaatgcatgtc 17643080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 18976050 - 18976018
Alignment:
Q  48 atccctgcatataacaatgcatgtctttgacaa 80  Q
    |||||||||||||||||||||||||| ||||||    
T  18976050 atccctgcatataacaatgcatgtctctgacaa 18976018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 24427440 - 24427374
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    ||||||||||| ||||||||||||| || || |||||||||||||||||||||||| || |||||||    
T  24427440 ataaatggggtattcggggttcgaaccttgacccctgcatataacaatgcatgtctctgccaactga 24427374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 23799377 - 23799311
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| |||||||| || |||||||||| ||| |||||||||||||||||||||||| || |||||||    
T  23799377 ataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcatgtctctgccaactga 23799311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 45198116 - 45198167
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||| |||||||    
T  45198116 ataaatggggtgtccggggttcgaatctcaatcactgcatataataatgcat 45198167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11808115 - 11808061
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||    
T  11808115 ataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtc 11808061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 35195920 - 35195866
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||||||||||||||||||||| | ||  |||||||||||| ||||||||||    
T  35195920 ataaatggggtgttcggggttcgaaccccggcccctgcatataataatgcatgtc 35195866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 24304301 - 24304352
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||||||||||| ||||||| | ||| |||||||||||| |||||||    
T  24304301 ataaatggggtgttcggagttcgaaccccgacccctgcatataataatgcat 24304352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 42181495 - 42181562
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaa 85  Q
    |||| ||||||||| |||||| |||  |||  ||||||||||||||||||||||| ||| ||||||||    
T  42181495 ataagtggggtgtttggggtttgaacttcggcccctgcatataacaatgcatgtccttgtcaactgaa 42181562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 1513564 - 1513510
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||||||| ||||||| ||| | |||| ||||||||||||||||||    
T  1513564 ataagtggggtgttcggtgttcgaacctcaacccctacatataacaatgcatgtc 1513510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 10020487 - 10020541
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||| ||||||||||||||| | | | |||||||||||||||||||||||    
T  10020487 ataagtgggttgttcggggttcgaaccccaacccctgcatataacaatgcatgtc 10020541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43635665 - 43635599
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| |||||||| ||||||||||| | ||| | |||||||||||||||||||| | || |||||||    
T  43635665 ataagtggggtgtccggggttcgaaccccgaccgctgcatataacaatgcatgtttctgccaactga 43635599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 5773197 - 5773152
Alignment:
Q  27 gtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| ||||||||||| ||||| |||| ||||||||||||||||||    
T  5773197 gtgtccggggttcgaacctcgacccctacatataacaatgcatgtc 5773152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 7465538 - 7465477
Alignment:
Q  23 tggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||||||| ||||||||||| | ||  |||||||||||| ||||||||||| || |||||||    
T  7465538 tggggtgtccggggttcgaaccccggcccctgcatataataatgcatgtctctgccaactga 7465477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14307712 - 14307766
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  14307712 ataagtggggtgttcggggttcgaacctcgacccctgcatataacaatgcatgtc 14307766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 917315 - 917387
Alignment:
Q  24 ggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaatcaagctcacg 96  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||||||||| |  ||||||| | |||||||||    
T  917315 ggggtgttcagggttcgaatcccgacccctgcatataataatgcatgtctctaccaactgagttaagctcacg 917387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 18065323 - 18065279
Alignment:
Q  26 ggtgttcggggttcgaatctcgatccctgcatataacaatgcatg 70  Q
    ||||||||||||||||| ||| | |||||||||||||||||||||    
T  18065323 ggtgttcggggttcgaacctcaacccctgcatataacaatgcatg 18065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 37123256 - 37123208
Alignment:
Q  25 gggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtct 73  Q
    |||||| ||| ||||||||||||| |||||||||||| |||||||||||    
T  37123256 gggtgtccggagttcgaatctcgacccctgcatataataatgcatgtct 37123208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 407555 - 407477
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaatcaagctcacgt 97  Q
    ||||||||||||| |||||||||||   ||| || ||||||||||||||||| || ||| |||| || ||||||||||||    
T  407555 ataaatggggtgt-cggggttcgaactccgacccttgcatataacaatgcatatccttgccaaccgagtcaagctcacgt 407477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 7086330 - 7086279
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||||||||||||||||| ||  |||||||||||| |||||||    
T  7086330 ataattggggtgttcggggttcgaatcccggcccctgcatataataatgcat 7086279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 11133153 - 11133102
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||| ||||||||||| | ||| ||||||||||||||||||||    
T  11133153 ataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcat 11133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 25463284 - 25463338
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||| ||||||||||| ||||||| ||| ||||||| ||||||||||| |||||    
T  25463284 ataaaaggggtgttcggagttcgaacctcaatccctgtatataacaatgaatgtc 25463338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 40471230 - 40471176
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| ||||||||||||| |||||||| | | |||||||||||| ||||||||||    
T  40471230 ataagtggggtgttcgggattcgaatcccaacccctgcatataataatgcatgtc 40471176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 41699179 - 41699129
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgca 68  Q
    |||| |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  41699179 ataagtggggtgttcggggttcgaaccccgacccctgcatataataatgca 41699129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 27495605 - 27495564
Alignment:
Q  28 tgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||||||||||||| | |||||||||||| |||||||    
T  27495605 tgttcggggttcgaatctcaacccctgcatataataatgcat 27495564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 33816408 - 33816449
Alignment:
Q  20 aaatggggtgttcggggttcgaatctcgatccctgcatataa 61  Q
    ||||||||||||||||||||||| | ||| ||||||||||||    
T  33816408 aaatggggtgttcggggttcgaaacccgacccctgcatataa 33816449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 35122121 - 35122071
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgca 68  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  35122121 ataaatggggtgttcgggattcgaatctcgacccctacatataacaatgca 35122071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 30032884 - 30032833
Alignment:
Q  25 gggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttg 76  Q
    |||||||||| ||||||| | |||||| ||||||||||||||||||||||||    
T  30032884 gggtgttcggagttcgaaccccgatccatgcatataacaatgcatgtctttg 30032833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 43115345 - 43115302
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataa 61  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  43115345 ataaatggggtgtccggggttcgaatctcgacccctgcatataa 43115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1589175 - 1589229
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||||| ||| |||||||||||||  || |||||||||||||||||||||||    
T  1589175 ataaatgggatgtccggggttcgaatcctgacccctgcatataacaatgcatgtc 1589229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 4419704 - 4419770
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    ||||||| ||||||| ||||| ||| | ||  |||||||||||||||||||||||| ||||||||||    
T  4419704 ataaatgaggtgttctgggtttgaaccccggcccctgcatataacaatgcatgtctctgacaactga 4419770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 9084836 - 9084785
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||| || |||||||||| ||| ||||||||||||||||||||    
T  9084836 ataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcat 9084785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 31480348 - 31480297
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| ||||||||||||||||||||| ||   ||||||||||||||||||||    
T  31480348 ataagtggggtgttcggggttcgaatttcagcccctgcatataacaatgcat 31480297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 36008352 - 36008301
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||||||||||||||| | ||  ||||||||||||||||||||    
T  36008352 ataagtggggtgttcggggttcgaaccccggcccctgcatataacaatgcat 36008301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 36954214 - 36954163
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||||||| ||||||||||| | ||| |||||||||||| |||||||    
T  36954214 ataaatggggtgtccggggttcgaaccccgacccctgcatataataatgcat 36954163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37032197 - 37032248
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||| |||||||    
T  37032197 ataagtggggtgtccggggttcgaatcccgacccctgcatataataatgcat 37032248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 42432078 - 42432031
Alignment:
Q  25 gggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||||| ||||||| | | |||||||||||||||||||||||||    
T  42432078 gggtgttcggagttcgaaccccaatccctgcatataacaatgcatgtc 42432031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 36045899 - 36045853
Alignment:
Q  26 ggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||| ||| ||||||||||| | |||||||||||||||||||||||    
T  36045899 ggtgtccggagttcgaatctcaacccctgcatataacaatgcatgtc 36045853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 49039463 - 49039517
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||| ||||||||||| | |  ||||||||||||||||||||||||    
T  49039463 ataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtc 49039517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 55967655 - 55967601
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||| |||||||||||| | |  |||||||||||||||||||||||    
T  55967655 ataagtggggtgtccggggttcgaattttgtcccctgcatataacaatgcatgtc 55967601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 43905785 - 43905745
Alignment:
Q  23 tggggtgttcggggttcgaatctcgatccctgcatataaca 63  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  43905785 tggggtgtccggggttcgaaccccgatccctgcatataaca 43905745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 30542841 - 30542790
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||  ||||||||||||||| | ||||||||||||||||||||||||    
T  30542841 ataaatggaatgttcggggttcgaaccccgatccctgcatataacaatgcat 30542790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 22847295 - 22847334
Alignment:
Q  33 ggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  22847295 ggggttcgaacctcgacccctgcatataacaatgcatgtc 22847334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 42688133 - 42688082
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||||||||||||||||| ||| |||| ||||||| |||||||    
T  42688133 ataagtggggtgttcggggttcgaatcccgacccctacatataataatgcat 42688082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 26657927 - 26657879
Alignment:
Q  24 ggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||  |||||||||| | || ||||||||||||||||||||||||    
T  26657927 ggggtgtctggggttcgaaccccggtccctgcatataacaatgcatgtc 26657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 1488165 - 1488110
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtct 73  Q
    |||||||||||||| |||||||||| | ||| | ||||||||||||||||||||||    
T  1488165 ataaatggggtgtttggggttcgaaccccgacctctgcatataacaatgcatgtct 1488110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 30833094 - 30833027
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaa 85  Q
    |||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||  || ||||||||    
T  30833094 ataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaa 30833027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 8176073 - 8176007
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| |||||||||||| |||||||   |  ||||||||||||||||||||||||| || |||||||    
T  8176073 ataagtggggtgttcggagttcgaacaccagtccctgcatataacaatgcatgtctctgtcaactga 8176007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 22730720 - 22730786
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| |||||||| || ||||||||  ||  ||||||||||||||||||||||||| || |||||||    
T  22730720 ataagtggggtgtccgaggttcgaacttcagtccctgcatataacaatgcatgtctctgccaactga 22730786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 34524952 - 34524898
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||||||||| ||||| | ||  |||||||||||||||||||||||    
T  34524952 ataagtggggtgttcggggctcgaaccccggcccctgcatataacaatgcatgtc 34524898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 18631549 - 18631501
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatg 66  Q
    |||| |||||| || |||||||||||| ||| |||||||||||||||||    
T  18631549 ataagtggggtatttggggttcgaatcccgacccctgcatataacaatg 18631501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 3973379 - 3973325
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||||||||| |||||||| |||| ||  |||||||||||||||||||||||    
T  3973379 ataaatggggtgtccggggttcaaatcgcggcccctgcatataacaatgcatgtc 3973325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3996497 - 3996551
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||||||||| |||||||| |||| ||  |||||||||||||||||||||||    
T  3996497 ataaatggggtgtccggggttcaaatcgcggcccctgcatataacaatgcatgtc 3996551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 19137696 - 19137643
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgt 71  Q
    |||||||||||||  |||||||||| ||||  ||||||||||||||||||||||    
T  19137696 ataaatggggtgtctggggttcgaacctcggcccctgcatataacaatgcatgt 19137643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 3993724 - 3993779
Alignment:
Q  17 cataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||||||||| |||||||| || | ||  |||||||||||||||||||||||    
T  3993724 cataaatggggtgtccggggttcaaaccgcggcccctgcatataacaatgcatgtc 3993779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 4045652 - 4045719
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaa 85  Q
    |||| |||||||| ||  ||||||| ||||| |||||||||||||||||||||||  || ||||||||    
T  4045652 ataagtggggtgtccgaagttcgaacctcgacccctgcatataacaatgcatgtccctgtcaactgaa 4045719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 32508812 - 32508863
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||||||||||||||| | ||| |||||||||||| |||||||    
T  32508812 ataagtggggtgttcggggttcgaaccccgacccctgcatataataatgcat 32508863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 4010036 - 4010090
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||||||||||||||||| ||   ||  |||||||||||||||||||||||    
T  4010036 ataaatggggtgttcggggttcaaactgcggcccctgcatataacaatgcatgtc 4010090  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 24160546 - 24160612
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| ||| |||| ||||||||||| | ||| |||||||||||||| ||||||||| || |||||||    
T  24160546 ataagtggagtgtccggggttcgaaccccgacccctgcatataacagtgcatgtctctgccaactga 24160612  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 27119353 - 27119299
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| ||||||||||||| |||||| | ||| | |||||||||||||||||||||    
T  27119353 ataagtggggtgttcgggattcgaaccccgacctctgcatataacaatgcatgtc 27119299  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 28951943 - 28951877
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| |||||||||||||||||||| |  || |||||||||||| ||||||||| | || |||||||    
T  28951943 ataagtggggtgttcggggttcgaaccctgacccctgcatataataatgcatgtatctgccaactga 28951877  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 16874213 - 16874262
Alignment:
Q  23 tggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||||||| || |||||||| ||||  |||||||||||||||||||||||    
T  16874213 tggggtgtccgcggttcgaacctcggcccctgcatataacaatgcatgtc 16874262  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 794033 - 794081
Alignment:
Q  25 gggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtct 73  Q
    |||||| ||||||||||||| ||  ||| ||||||||||||||||||||    
T  794033 gggtgtccggggttcgaatcccggcccccgcatataacaatgcatgtct 794081  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 3461748 - 3461796
Alignment:
Q  24 ggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||||||||||||||| | | | |||| ||||||||||||||||||    
T  3461748 ggggtgttcggggttcgaaccccaacccctacatataacaatgcatgtc 3461796  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 8175837 - 8175797
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcata 58  Q
    |||| |||||||||||| ||||||| |||||||||||||||    
T  8175837 ataagtggggtgttcggagttcgaacctcgatccctgcata 8175797  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 34407108 - 34407184
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactgaatcaagctca 94  Q
    |||| ||||||||  |||||||||| | | | |||||||||||| ||||||||||  || ||||||| |||||||||    
T  34407108 ataagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaactgagtcaagctca 34407184  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 36741991 - 36742051
Alignment:
Q  24 ggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    ||||||| | ||||||||| | |||||||||||||||||||| ||||||| || |||||||    
T  36741991 ggggtgtccagggttcgaaccccgatccctgcatataacaattcatgtctctgccaactga 36742051  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 2029146 - 2029189
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataa 61  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  2029146 ataagtggggtgttcggggttcgaatcccgacccctgcatataa 2029189  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3102145 - 3102196
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    ||||||||||||||||||||||||| | |||  ||| |||||||||||||||    
T  3102145 ataaatggggtgttcggggttcgaaccccgactcctacatataacaatgcat 3102196  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 6806658 - 6806709
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| ||| |||| ||||||||||||| ||| ||||||||||||||||||||    
T  6806658 ataagtggagtgtccggggttcgaatcccgacccctgcatataacaatgcat 6806709  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 18872598 - 18872547
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||| |||||||||||||||||||| | ||| |||||||||||| |||||||    
T  18872598 ataagtggggtgttcggggttcgaaccccgacccctgcatataataatgcat 18872547  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 19982266 - 19982317
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||||||||||||||||||||||||  || | |||||||||||| |||||||    
T  19982266 ataaatggggtgttcggggttcgaacttcaacccctgcatataataatgcat 19982317  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 31556895 - 31556841
Alignment:
Q  18 ataaatggggtgttcggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    |||| |||||||| |||||||||||   ||| |||||||||||||||||||||||    
T  31556895 ataagtggggtgtccggggttcgaactccgacccctgcatataacaatgcatgtc 31556841  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 42553168 - 42553224
Alignment:
Q  27 gtgttcggggttcgaatctcgatccctgcatataacaatgcatgtctttgacaactga 84  Q
    |||| ||||||||||| | ||| ||||||||||||||||||||||| ||| |||||||    
T  42553168 gtgtccggggttcgaaccccga-ccctgcatataacaatgcatgtcgttgtcaactga 42553224  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 27440323 - 27440367
Alignment:
Q  25 gggtgttcggggttcgaatctcgatccctgcatataacaatgcat 69  Q
    |||||||||||||||||| ||||| | |||||||||| |||||||    
T  27440323 gggtgttcggggttcgaacctcgaccactgcatataataatgcat 27440367  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 38040325 - 38040289
Alignment:
Q  36 gttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  38040325 gttcgaacctcgacccctgcatataacaatgcatgtc 38040289  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 42781626 - 42781666
Alignment:
Q  32 cggggttcgaatctcgatccctgcatataacaatgcatgtc 72  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  42781626 cggggttcgaaccccgaaccctgcatataacaatgcatgtc 42781666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 21016 - 21048
Alignment:
Q  52 ctgcatataacaatgcatgtctttgacaactga 84  Q
    ||||||||||||||||||||||||| |||||||    
T  21016 ctgcatataacaatgcatgtctttgtcaactga 21048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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