View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_22 (Length: 231)
Name: NF12146_low_22
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 44565732 - 44565529
Alignment:
| Q |
15 |
cagagacataagaccagtataaccaaggagagtttgaaaagctgatccaataattatagccccttgcagctccttcattatatgtttgaatttctgaaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565732 |
cagagacataagaccagtataaccaaggagagtttgaaaagctgatccaataattatagccccttgcagctccttcattatatgtttgaatttctgaaaa |
44565633 |
T |
|
| Q |
115 |
ttgatatagaaacattatcagcaaccttagttccaattattccatcaaagaagtttataacgcacaatagaaagcctgttacatttcacgaataaccaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565632 |
ttgatatagaaacattatcagcaaccttagttccaattattccatcaaagaagtttataacgcacaatagaaagcctgttacatttcacgaataaccaac |
44565533 |
T |
|
| Q |
215 |
aaca |
218 |
Q |
| |
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|||| |
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|
| T |
44565532 |
aaca |
44565529 |
T |
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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 36035062 - 36035261
Alignment:
| Q |
19 |
gacataagaccagtataaccaaggagagtttgaaaagctgatccaataattatagccccttgcagctccttcattatatgtttgaatttctgaaaattga |
118 |
Q |
| |
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|||||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
36035062 |
gacataagtccagtatatccaaggaaagtttgaaaagcagatccaataattatagccccctgcagctccttcattatatgtcggaatttctgaaaattga |
36035161 |
T |
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| Q |
119 |
tatagaaacattatcagcaaccttagttccaattattccatcaaagaagtttataacgcacaatagaaagcctgttacatttcacgaataaccaacaaca |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | || || ||||||||||| || | | ||||||||||||||| |
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| T |
36035162 |
tatcaaaacattatcagcaaccttagttccaattattccgtcaaagaagtttatagtgtaccattcaaagcctgttaaatctaaagaataaccaacaaca |
36035261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 20120827 - 20120728
Alignment:
| Q |
19 |
gacataagaccagtataaccaaggagagtttgaaaagctgatccaataattatagccccttgcagctccttcattatatgtttgaatttctgaaaattga |
118 |
Q |
| |
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|||||||| || ||||| ||||| |||| |||||| || || ||||||||||||||||| || |||||| |||||||||| ||||||||||| ||||||| |
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| T |
20120827 |
gacataagtccggtatatccaagtagagcttgaaaggcggacccaataattatagccccctgaagctccctcattatatgcttgaatttctgcaaattga |
20120728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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