View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12146_low_4 (Length: 511)

Name: NF12146_low_4
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12146_low_4
NF12146_low_4
[»] chr7 (17 HSPs)
chr7 (1-495)||(24138137-24138632)
chr7 (20-495)||(24145869-24146347)
chr7 (19-244)||(24132456-24132681)
chr7 (19-276)||(24151082-24151339)
chr7 (45-241)||(24232523-24232719)
chr7 (19-244)||(24122025-24122250)
chr7 (19-286)||(3494782-3495049)
chr7 (41-229)||(24154284-24154472)
chr7 (307-445)||(24126835-24126973)
chr7 (65-241)||(24284035-24284212)
chr7 (68-224)||(24161202-24161358)
chr7 (65-243)||(24238085-24238263)
chr7 (22-142)||(21194258-21194378)
chr7 (79-220)||(21199528-21199669)
chr7 (172-224)||(24255599-24255651)
chr7 (65-144)||(23342863-23342942)
chr7 (187-244)||(21194387-21194444)
[»] chr2 (2 HSPs)
chr2 (65-241)||(10988834-10989010)
chr2 (72-196)||(28160506-28160630)
[»] chr1 (2 HSPs)
chr1 (19-244)||(3151034-3151258)
chr1 (65-192)||(15380195-15380322)


Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 24138632 - 24138137
Alignment:
Q  1 gattcttaccatgactggacaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24138632 gattcttaccatgactggacaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttactgaggcagataaggatttt 24138533  T
Q  101 gttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataa 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138532 gttgatgttcttttgagtttcttaacattacccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataa 24138433  T
Q  201 gttcactctatcaaagtgtgtcagttcttgatcaacaatatctacactcacaaatctgcaaggagatgctacttaatcctataaaccgatcgggcgctta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138432 gttcactctatcaaagtgtgtcagttcttgatcaacaatatctacactcacaaatctgcaaggagatgctacttaatcctataaaccgatcgggcgctta 24138333  T
Q  301 ttgcaggaatatgaaactgaacattgacaatactgagcccttgaagtcattctacctctgtgagaatgtggcatgcaaaattgaaaataggtcttgtttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138332 ttgcaggaatatgaaactgaacattgacaatactgagcccttgaagtcattctacctctgtgagaatgtggcatgcaaaattgaaaataggtcttgtttg 24138233  T
Q  401 agttactatatgaatcaaaaatgtatttgtggaaagctgttgaaccg-gnnnnnnntcctgattttgagtaaagaaattggttttgttaatgaaat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||| ||||||||||    
T  24138232 agttactatatgaatcaaaaatgtatttgtggaaagctgttgaaccgagaaaaaaaccctgattttgagtaaagaaattggttttattaatgaaat 24138137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 495
Target Start/End: Complemental strand, 24146347 - 24145869
Alignment:
Q  20 caagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtt 119  Q
    ||||| ||||||||  |||| |||||| |||||   |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||| |    
T  24146347 caagtcgacaaagtttcccttagagttgtggtgctgaaggagaaaaacaaagttctgtttgcagaggcaggaaaggattttgttgatgttcttttgagct 24146248  T
Q  120 tcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgt 219  Q
    ||||| ||||||| ||||| || || |||  | ||||||  || || |||||||||||| |||||| |||||||||||| || ||| | |||||||||||    
T  24146247 tcttatcattgcctttagggaccattgcaaaactcgtggcaaaggactcaaatattgaatcagtgaaatttggcagcattagctcattgtatcaaagtgt 24146148  T
Q  220 gtcagttcttgatcaacaatatctacactcacaaatctgcaaggagatgctacttaatcctataaaccgatcgggcgcttattgcaggaatatgaaactg 319  Q
    ||||| |||||||  |||||||||    ||||| | ||||||||| |||||||| |||||||  |||  | |||  ||||||||| ||||||||||| ||    
T  24146147 gtcagatcttgatacacaatatctttggtcacacacctgcaaggaaatgctactcaatcctaacaactcagcggaagcttattgctggaatatgaaattg 24146048  T
Q  320 aacattgacaatactgagcccttgaagtcattctacctctgtgagaatgtggcatgcaaa---attgaaaataggtcttgtttgagttactatatgaatc 416  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||| ||  ||||   |    ||||  ||| ||  ||||||||||||| || |||||    
T  24146047 aacattgacaatactgagtccttgaagtcctactacctctgtgagaacgtttcatgtttatctgttgaccataagtactgtttgagttactttaggaatc 24145948  T
Q  417 aaaaatgtatttgtggaaagctgttgaaccggnnnnnnntcctgattttgagtaaagaaattggttttgttaatgaaat 495  Q
    ||||||||||||||||||||| |||||||||         || |||||||||||||||||| ||||||||||| |||||    
T  24145947 aaaaatgtatttgtggaaagccgttgaaccgagaaaaatcccggattttgagtaaagaaatcggttttgttaaggaaat 24145869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 24132681 - 24132456
Alignment:
Q  19 acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt 118  Q
    ||||| ||||||||| ||| | |||||||||||||||||  | || | ||||||| ||| |||||| ||||  |||||||||||||||| |||||| ||     
T  24132681 acaaggtgacaaagttaccttgagagttttggtggacaaacaaaagagcaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagc 24132582  T
Q  119 ttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtg 218  Q
    |||||||||||||| ||||||||||| ||| || | ||||  || |||||| ||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  24132581 ttcttaacattgcctttaggtactattgcaagacttgtggcaaaggagtcagatattgaagcagtgatatttggcagcattaattcactgtatcaaagtg 24132482  T
Q  219 tgtcagttcttgatcaacaatatcta 244  Q
    || ||| |||||||||||||||||||    
T  24132481 tgacagatcttgatcaacaatatcta 24132456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 24151339 - 24151082
Alignment:
Q  19 acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt 118  Q
    ||||||||||||||| ||| | ||||||||||| || || ||||||||||||||||| || |||||||| |  ||||||||||||||||  || || ||     
T  24151339 acaagttgacaaagttaccttgagagttttggtcgataaagagaaaaacaaagttctattggctgaggctgggaaggattttgttgatgcactcttcagc 24151240  T
Q  119 ttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtg 218  Q
    ||||||||||| || ||||||||||| ||  || |||||| | ||||||||||||| |||||||||| |||||| ||  | |||||||| ||||||||||    
T  24151239 ttcttaacatttcctttaggtactattgctagactcgtggctgaagagtcaaatatcgaagcagtgaaatttggtagtttgagttcactatatcaaagtg 24151140  T
Q  219 tgtcagttcttgatcaacaatatctacactcacaaatctgcaaggagatgctacttaa 276  Q
    ||  || |||||||| ||||||||||   ||||| | |||||| || |||||||||||    
T  24151139 tgaaagatcttgatccacaatatctatggtcacatacctgcaaagaaatgctacttaa 24151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 24232719 - 24232523
Alignment:
Q  45 ttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactat 144  Q
    ||||||||||||| || || ||||||||| ||| ||||||||| |  |||||||| ||||||| ||| || || |||||||||||||| ||||| |||||    
T  24232719 ttttggtggacaaagaaaagaacaaagttgtgtatgctgaggctgggaaggatttcgttgatgctctcttcagcttcttaacattgcctttagggactat 24232620  T
Q  145 cgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatat 241  Q
     ||| || | |||| ||| || ||||||||||||||||||| |||||||||||| || ||| | |||||||||||||||  ||||||||||||||||    
T  24232619 tgcaagatttgtggctaaggactcaaatattgaagcagtgaaatttggcagcattagctcattgtatcaaagtgtgtcaaatcttgatcaacaatat 24232523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 24122250 - 24122025
Alignment:
Q  19 acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt 118  Q
    ||||| |||| |||| ||| | |||||  |||||||||| || | |||||||||| ||| |||||| ||||  |||||||||||||||| |||||| ||     
T  24122250 acaaggtgacgaagttaccttgagagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagc 24122151  T
Q  119 ttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtg 218  Q
    |||||||| || || |||||||||||  || || | |||| ||| |||||| |||||||||||||||||||||||||| | ||| |||| ||||||||||    
T  24122150 ttcttaaccttaccattaggtactatttcaagacttgtggctaaggagtcagatattgaagcagtgagatttggcagcctgagtacactttatcaaagtg 24122051  T
Q  219 tgtcagttcttgatcaacaatatcta 244  Q
    | |||| ||||||| |||| ||||||    
T  24122050 tatcagatcttgatgaacactatcta 24122025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 3495049 - 3494782
Alignment:
Q  19 acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt 118  Q
    ||||||||||||||| | | |  ||||||| || ||||| || | ||| | |||||||| |||||| || | ||||||||| || |||||||| || |||    
T  3495049 acaagttgacaaagttagcttgcgagttttagttgacaaagaaagaaatagagttctgtatgctgaagccggtaaggatttcgtcgatgttctctttagt 3494950  T
Q  119 ttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtg 218  Q
    ||||||||||||||  |||||||||| ||| || | ||   ||| || ||||||||||||||||||| |||||| ||||| || ||||| ||||||||||    
T  3494949 ttcttaacattgcctctaggtactattgcaagattagtttctaaggattcaaatattgaagcagtgaaatttggtagcattagctcactatatcaaagtg 3494850  T
Q  219 tgtcagttcttgatcaacaatatctacactcacaaatctgcaaggagatgctacttaatcctataaac 286  Q
    |||||    |||| ||||||||||||   ||||| |  ||||| || |||||||| ||||||| ||||    
T  3494849 tgtcaaaatttgaccaacaatatctatggtcacatacttgcaaagaaatgctactcaatcctagaaac 3494782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 24154472 - 24154284
Alignment:
Q  41 agagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggta 140  Q
    ||||||||||||||||| | ||  || |||||| | | |||||| ||||| |||||||| ||||||||||| || || |||||||||||||| |||||||    
T  24154472 agagttttggtggacaaagcgaggaaaaaagttgtttatgctgaagcagagaaggatttcgttgatgttctgttaagcttcttaacattgcctttaggta 24154373  T
Q  141 ctatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcagttctt 229  Q
    |||| ||| || | ||   ||||||||| |||||||||||||| | ||||   ||||| |||||||| ||||||||||| |||| ||||    
T  24154372 ctattgcaagacttgtatctaaagagtcgaatattgaagcagttaaatttaatagcattagttcactgtatcaaagtgtttcagatctt 24154284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 307 - 445
Target Start/End: Complemental strand, 24126973 - 24126835
Alignment:
Q  307 gaatatgaaactgaacattgacaatactgagcccttgaagtcattctacctctgtgagaatgtggcatgcaaaattgaaaataggtcttgtttgagttac 406  Q
    |||||||||||||||||||||| ||| ||  ||||||||| |   ||||||||||||||| | | | |||| |||||||||||||   ||||| ||||||    
T  24126973 gaatatgaaactgaacattgacgatattgtacccttgaagactgactacctctgtgagaacgagacttgcagaattgaaaataggaactgtttaagttac 24126874  T
Q  407 tatatgaatcaaaaatgtatttgtggaaagctgttgaac 445  Q
    || | |||||| |||||||||||||||||||||||||||    
T  24126873 tacaggaatcagaaatgtatttgtggaaagctgttgaac 24126835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 24284035 - 24284212
Alignment:
Q  65 aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaag 164  Q
    ||||||||||| | | |||| ||||  ||||||||||||||||| || || || ||||| || ||||||||||| ||||| ||| || |||| | || ||    
T  24284035 aacaaagttctatatcctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagactcgttgctacag 24284134  T
Q  165 agtcaaatattgaagcag-tgagatttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatat 241  Q
    | |||||||||||||||| | |  ||||||||||| || ||||| |||||||||||   || ||||||||||||||||    
T  24284135 actcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatat 24284212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 24161358 - 24161202
Alignment:
Q  68 aaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagt 167  Q
    |||||||| | ||||||||| |  ||||||||||| ||||||||||| || ||||| ||||| ||  |||| ||||| ||  || || |   ||||||||    
T  24161358 aaagttctatatgctgaggctggaaaggattttgtcgatgttcttttcagcttcttgacattacctctagggactattgcttgactcatatctaaagagt 24161259  T
Q  168 caaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcag 224  Q
    ||||||| ||||||||||| ||||||||||| |||||||| || | |||||||||||    
T  24161258 caaatatggaagcagtgaggtttggcagcattagttcactgtacctaagtgtgtcag 24161202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 24238085 - 24238263
Alignment:
Q  65 aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaag 164  Q
    ||||||||| ||| |||||||||||  ||||||||||| |||| ||| || ||||||||||||||||| ||||| ||||| ||| || | | || |||      
T  24238085 aacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttaggaactattgcaagacttgcggctaagc 24238184  T
Q  165 agtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatatct 243  Q
    |||| ||||| | ||| || | | |||| ||| | ||||||||  ||||||||||  ||| ||||||| ||||||||||    
T  24238185 agtcgaatatcggagctgtaacagttggaagcctgagttcactgcatcaaagtgtagcagatcttgatgaacaatatct 24238263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 21194258 - 21194378
Alignment:
Q  22 agttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttc 121  Q
    |||||||||||| ||  | || ||| |||||||||| || |  ||||||||| ||| |||||||||||  ||||||||| |||| ||||| || || |||    
T  21194258 agttgacaaagttacattgagggttatggtggacaaagaaaggaacaaagttttgtatgctgaggcagggaaggattttattgaagttctattcagcttc 21194357  T
Q  122 ttaacattgcccttaggtact 142  Q
    ||||||||||| |||||||||    
T  21194358 ttaacattgcctttaggtact 21194378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 21199528 - 21199669
Alignment:
Q  79 tgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaa 178  Q
    |||||||||||  |||||||||||||||| ||| ||  | |||||||||||||| ||||| ||||| ||| || | |||    | ||||| |||||||||    
T  21199528 tgctgaggcaggaaaggattttgttgatgctctcttcggcttcttaacattgcctttaggaactattgcaagactagtgtccgaggagtcgaatattgaa 21199627  T
Q  179 gcagtgagatttggcagcataagttcactctatcaaagtgtg 220  Q
    ||  ||| |||||||||||| || ||||| ||||| ||||||    
T  21199628 gctatgaaatttggcagcattagctcactgtatcagagtgtg 21199669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 24255599 - 24255651
Alignment:
Q  172 tattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcag 224  Q
    |||||||||||||| ||||||||||||||| || ||  |||||||||||||||    
T  24255599 tattgaagcagtgaaatttggcagcataagctcgctgaatcaaagtgtgtcag 24255651  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 23342942 - 23342863
Alignment:
Q  65 aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactat 144  Q
    ||||||||  |||||||||| ||||  ||||| ||||| |||||||| || || |||||||||||||| ||||| |||||    
T  23342942 aacaaagtcttgtttgctgaagcaggaaaggactttgtggatgttctgtttagcttcttaacattgcctttaggaactat 23342863  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 21194387 - 21194444
Alignment:
Q  187 atttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatatcta 244  Q
    |||||||||||| || ||||| |||||||||||| ||  ||||||| |||||||||||    
T  21194387 atttggcagcattagctcactatatcaaagtgtggcaaatcttgatgaacaatatcta 21194444  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 10988834 - 10989010
Alignment:
Q  65 aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaag 164  Q
    ||||||||||||| |||||||||||  |||||||| ||||||||||| || || |||||||||||||| ||||| ||||| ||  || | |||| || ||    
T  10988834 aacaaagttctgtatgctgaggcagtgaaggatttcgttgatgttctcttcagcttcttaacattgcctttagggactattgcgagacttgtggctacag 10988933  T
Q  165 agtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatat 241  Q
    |||||||||||||||||||   |||||| ||||| |||||||| ||||||||||||  || ||||||||| ||||||    
T  10988934 agtcaaatattgaagcagttcaatttggtagcattagttcactatatcaaagtgtgaaagatcttgatcagcaatat 10989010  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 28160506 - 28160630
Alignment:
Q  72 ttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaa 171  Q
    |||||| |||||| ||||  ||||||||||||| || |||||| || |||||||| || |  |||||||||||  |  || | |||| ||| |||||| |    
T  28160506 ttctgtatgctgaagcagggaaggattttgttggtgctcttttcagcttcttaaccttactgttaggtactatttctagacttgtggctaaggagtcaga 28160605  T
Q  172 tattgaagcagtgagatttggcagc 196  Q
    |||||| ||||||| ||||||||||    
T  28160606 tattgacgcagtgaaatttggcagc 28160630  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 3151034 - 3151258
Alignment:
Q  19 acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt 118  Q
    ||||||||||||||| | | | ||| || |||||||||| || |  ||||| ||||| | ||||||||| |  |||||||| || |||||||||||||||    
T  3151034 acaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagt 3151132  T
Q  119 ttcttaacattgcccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtg 218  Q
    || |||||||| ||  |||| ||||| ||| || || |   | | |||||||||||||||||||||| | ||||||||||||| ||| | |||| | |||    
T  3151133 tttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtg 3151232  T
Q  219 tgtcagttcttgatcaacaatatcta 244  Q
    | || | |||||||||||||||||||    
T  3151233 tatcggatcttgatcaacaatatcta 3151258  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 15380195 - 15380322
Alignment:
Q  65 aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcccttaggtactatcgcaggaatcgtggataaag 164  Q
    ||||||||||| | ||  |||||||  |||||||||||||||  |||||| || ||||||| ||| || ||||| ||||| ||| || | | || ||| |    
T  15380195 aacaaagttctatatgtagaggcagggaaggattttgttgatactcttttcagcttcttaatatttcctttagggactattgcaagacttgcggctaagg 15380294  T
Q  165 agtcaaatattgaagcagtgagatttgg 192  Q
    |||||||||| || ||||||| ||||||    
T  15380295 agtcaaatatcgacgcagtgaaatttgg 15380322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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