View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_5 (Length: 467)
Name: NF12146_low_5
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Complemental strand, 38923999 - 38923565
Alignment:
| Q |
15 |
tgctttgatcccaacacaaaagatgaaggtgttgaaaactctcccaatgatnnnnnnnnnnnnnnnnnnnntagccttcaagagaatttcaagccttctg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
38923999 |
tgctttgatcccaacacaaaagatgaaggtgttgaaaactctcccaatgataacaacacaaacaacaacaatagccttgaagagaatttcaagccttctg |
38923900 |
T |
|
| Q |
115 |
tagaggaactaccttaccacaatcatcaaaattcacaacaccttgatgatgtttccacttatacaaatggattcactccctcatcagtagacattgaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38923899 |
tagaggaactaccttaccacaatcatcaaaattcacaacaccttgatgatgtttccacttatacaaatggattcactccctcatcagtagacattgaaca |
38923800 |
T |
|
| Q |
215 |
actacaaaatcttggtttgaacatagggactacctacaacaacatggataaccatttggtacaagaagtgtatcagaactcgagttgggaccctagtgtt |
314 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38923799 |
actacaaaatcttggtttgaacatagggaatacctacaacaacatggataaccatttggtacaagaagtgtatcagaactcgacttgggaccctagtgtt |
38923700 |
T |
|
| Q |
315 |
caggatatggattatgtccatcaccaagaacaccgccaactatctgaacaacaatatcaacaatttatcgaggcgcaaaaccataaccaaaactacaatc |
414 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38923699 |
caggatatggattatgtcaatcaccaagaacaccgccaactatctgaacaacaatatcaacaatttatcgaggcgcaaaaccataaccaaagctacaatc |
38923600 |
T |
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| Q |
415 |
cctcgaccattctagaccctcattacccttcaccg |
449 |
Q |
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| T |
38923599 |
cctcgaccattctagaccctcattacccttcaccg |
38923565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 94 - 356
Target Start/End: Complemental strand, 38910300 - 38910038
Alignment:
| Q |
94 |
aagagaatttcaagccttctgtagaggaactaccttaccacaatcatcaaaattcacaacaccttgatgatgtttccacttatacaaatggattcactcc |
193 |
Q |
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|||||||||||| ||||||||| |||||| | |||| ||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
38910300 |
aagagaatttcaggccttctgtggaggaattctcttatcacaatcatcacagcccacaacaccttgaagatgtctccacttatacaaatggattcactcc |
38910201 |
T |
|
| Q |
194 |
ctcatcagtagacattgaacaactacaaaatcttggtttgaacataggga-ctac--ctacaacaacatggataaccatttggtacaagaagtgtatcag |
290 |
Q |
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|||||||| | |||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
38910200 |
ctcatcagaaaacattgcacaac---aaaatcttggtttgaacatagggaactactactacaacaacatggataaccttttggagcaagaggtgtatcag |
38910104 |
T |
|
| Q |
291 |
aactcgagttgggaccctagtgttcaggatatggattatgtccatcaccaagaacaccgccaacta |
356 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| | ||||||||||| ||| ||||||| |
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| T |
38910103 |
aactcgagttgggaccctagtgctcaggatatggactatgccaatcaccaagaataccaccaacta |
38910038 |
T |
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