View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_6 (Length: 453)
Name: NF12146_low_6
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 111 - 437
Target Start/End: Complemental strand, 10887768 - 10887442
Alignment:
| Q |
111 |
taggttaggtatactttgtattattatctggggcacgtgaaactgtttttaactgcctgatagaccaagttgtatgaagtaccttttcaattggaataag |
210 |
Q |
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| T |
10887768 |
taggttaggtatactttgtattattatctggggcacgtgaaactgtttttaactgccttatacaccaagttgtatgaagtaccttttcaattggaataag |
10887669 |
T |
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| Q |
211 |
ggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaatgatgtgcatacagctcttttagtgcaggccattctagcttatgtaga |
310 |
Q |
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| T |
10887668 |
ggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaaggatgtgcatgcagctcttttagtgcaggccattctagcttatgtaga |
10887569 |
T |
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| Q |
311 |
cgaggataaaagtatttgagccttggcaattttattaggcgcattgtggtcagttgaggaaactcttttatttctccttctgcaggtatttcatccttcg |
410 |
Q |
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| T |
10887568 |
cgaggataaaagtatttgagccttggcaagtttattaggtgcattgtggtcagttgaggaaactcttttatttctccttctgcaggtatttcatccttcg |
10887469 |
T |
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| Q |
411 |
aaaatatttctaccagctcctcacagt |
437 |
Q |
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| T |
10887468 |
aaaatatttctaccagctcctcacagt |
10887442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 10887898 - 10887786
Alignment:
| Q |
4 |
agaagcattggatagtgacgactgatgagctttaggaattaaatttattgtttaaatatcatcaattgaataaaaataggaatagattccagtgatagat |
103 |
Q |
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| T |
10887898 |
agaagaattggatagtgacgactgatgagctttaggaattaaatttattgtttaaatatcatcaattgaataaaaataggaatagattccagtgatagat |
10887799 |
T |
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| Q |
104 |
acatttataggtt |
116 |
Q |
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| T |
10887798 |
acatttataggtt |
10887786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 190 - 425
Target Start/End: Complemental strand, 10855537 - 10855296
Alignment:
| Q |
190 |
taccttttcaattggaataagggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaatgatgtgcatacagctcttttagtgca |
289 |
Q |
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| T |
10855537 |
taccttttcaactggaacaagggcttgctcctctggatgatcttcttgacattcgagtatcactaagttacaccgatatgcatgcaattcttttagcatg |
10855438 |
T |
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| Q |
290 |
ggccattctagcttatgtagacgaggataaaagtatttgagccttggcaattttattaggcgcattgtggtcagttgagga------aactcttttattt |
383 |
Q |
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| T |
10855437 |
ggccattctagcttatgtaaaccacgataaaagtatttgagcgctggcaattttattatgtacaatgaggtcagagaaggaaacattaactcttttgttg |
10855338 |
T |
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| Q |
384 |
ctccttctgcaggtatttcatccttcgaaaatatttctacca |
425 |
Q |
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| T |
10855337 |
ctccttctgcaggtatttcatcctctgaaaatatttctacca |
10855296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 10855948 - 10855881
Alignment:
| Q |
12 |
tggatagtgacgactgatgagctttaggaattaaatttattgtttaaatatcatcaattgaataaaaa |
79 |
Q |
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| T |
10855948 |
tggatattgatgacttatgagctttaggaattagattaattgtttaaatatcatccattaaataaaaa |
10855881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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