View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12146_low_7 (Length: 447)

Name: NF12146_low_7
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12146_low_7
NF12146_low_7
[»] scaffold0536 (5 HSPs)
scaffold0536 (14-237)||(6497-6720)
scaffold0536 (284-447)||(6287-6450)
scaffold0536 (20-202)||(10514-10696)
scaffold0536 (284-447)||(10271-10432)
scaffold0536 (328-410)||(1278-1360)
[»] chr4 (10 HSPs)
chr4 (14-237)||(48912331-48912554)
chr4 (20-237)||(48958120-48958337)
chr4 (19-237)||(48965304-48965519)
chr4 (284-447)||(48912121-48912284)
chr4 (20-237)||(48961267-48961486)
chr4 (284-445)||(48958384-48958545)
chr4 (284-441)||(48965566-48965723)
chr4 (14-125)||(48974088-48974199)
chr4 (53-96)||(48951252-48951295)
chr4 (287-321)||(48974349-48974383)
[»] chr6 (4 HSPs)
chr6 (20-203)||(12590192-12590375)
chr6 (284-447)||(12589945-12590108)
chr6 (284-447)||(12483240-12483403)
chr6 (32-198)||(12483492-12483658)
[»] chr2 (5 HSPs)
chr2 (17-237)||(13448336-13448553)
chr2 (35-237)||(13440191-13440390)
chr2 (284-442)||(13448600-13448758)
chr2 (35-237)||(13454825-13455024)
chr2 (367-443)||(13455154-13455230)
[»] chr8 (1 HSPs)
chr8 (20-237)||(12641467-12641684)
[»] chr7 (2 HSPs)
chr7 (285-397)||(3417356-3417468)
chr7 (32-237)||(3417516-3417718)
[»] chr5 (3 HSPs)
chr5 (58-195)||(12540699-12540836)
chr5 (284-397)||(28385571-28385684)
chr5 (148-233)||(28385438-28385520)


Alignment Details
Target: scaffold0536 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 6720 - 6497
Alignment:
Q  14 acctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6720 acctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 6621  T
Q  114 cacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttct 213  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6620 cacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttct 6521  T
Q  214 ctcttcgaatccctttggcaacca 237  Q
    ||||||||||||||||||||||||    
T  6520 ctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 284 - 447
Target Start/End: Complemental strand, 6450 - 6287
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6450 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 6351  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6350 acaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacact 6287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 10696 - 10514
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||    
T  10696 gttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaat 10597  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt 202  Q
    | |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| |||||||||||||||||||||||    
T  10596 gtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttcttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 284 - 447
Target Start/End: Complemental strand, 10432 - 10271
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    |||||||| ||||  |||| || |||||||||||||| ||  || |||||||| |||||||||||||| |  |||   |||| |||||||||||| ||||    
T  10432 ggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgt 10333  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 447  Q
    ||||||||||  ||||| ||||| |||  ||||||||||||||||| |||||||||||||||||    
T  10332 acaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacact 10271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 1360 - 1278
Alignment:
Q  328 tgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagttatctggcttcgagt 410  Q
    ||||||||| || | ||||||||| ||||||  ||| ||| |||||||||||||||| |  |||||||||||| |||| ||||    
T  1360 tgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagt 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 48912554 - 48912331
Alignment:
Q  14 acctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 113  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  48912554 acctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacc 48912455  T
Q  114 cacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttct 213  Q
    ||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||| ||||    
T  48912454 cacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattct 48912355  T
Q  214 ctcttcgaatccctttggcaacca 237  Q
    |||||| || ||||||||||||||    
T  48912354 ctcttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 48958120 - 48958337
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||||| ||||    
T  48958120 gttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaat 48958219  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttc 219  Q
    | |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| ||||||||||| || |||||||||||    
T  48958220 gtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttc 48958319  T
Q  220 gaatccctttggcaacca 237  Q
    |||||| || ||||||||    
T  48958320 gaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 48965304 - 48965519
Alignment:
Q  19 tgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaa 118  Q
    ||||||||  ||||| ||||| ||||||||||| ||    ||||| || |||||||||||||| |||| ||||||||| || ||||| ||||| ||||||    
T  48965304 tgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttccaaccacaa 48965403  T
Q  119 tgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctctt 218  Q
    || |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||   ||||||||| || ||||||||||    
T  48965404 tgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttctttccaatgtttctctctt 48965500  T
Q  219 cgaatccctttggcaacca 237  Q
    ||||||||||||| |||||    
T  48965501 cgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 284 - 447
Target Start/End: Complemental strand, 48912284 - 48912121
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||||||||||||||    
T  48912284 ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgt 48912185  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 447  Q
    ||| ||| ||||||||| | |||||||  |||||||||| ||||||||||||||||||||||||    
T  48912184 acaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact 48912121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 48961267 - 48961486
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaa--ttccacccaca 117  Q
    ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || | |||||||||| |||||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  118 atgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctct 217  Q
    ||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct 48961466  T
Q  218 tcgaatccctttggcaacca 237  Q
    || ||||| || ||||||||    
T  48961467 tcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 445
Target Start/End: Original strand, 48958384 - 48958545
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    |||||||||||||  |||| |||||| ||||||||||||||||| |||||||| |||||||||||||| |  |||   |||| |||||||||||||||||    
T  48958384 ggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgt 48958483  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaaca 445  Q
    ||||||||||||||| |  |||| |||  ||||||||||||||  | |||||||| ||||||    
T  48958484 acaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaaca 48958545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 441
Target Start/End: Original strand, 48965566 - 48965723
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    |||| ||||||||| || |  |||||||||||||||||  |||| |||||||| ||||| ||||||||| |  || | || | ||||||||||| |||||    
T  48965566 ggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgt 48965665  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcac 441  Q
    ||||||||||||||| | |||| || |  |||||||||| |||||| ||||| |||||    
T  48965666 acaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcac 48965723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 48974088 - 48974199
Alignment:
Q  14 acctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 113  Q
    ||||| ||||||||||| || ||||| ||||||||  | ||||| |||||||||||||| ||||||||||||||||| || || || ||||| |||||||    
T  48974088 acctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttccacc 48974187  T
Q  114 cacaatgcgtca 125  Q
    | ||||| ||||    
T  48974188 cgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 48951252 - 48951295
Alignment:
Q  53 tgcaccggccacgtgatcatcggaacccctgcactaacagcctc 96  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  48951252 tgcaccggccacgtgatcatcggaacccctacactaatagcctc 48951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 48974349 - 48974383
Alignment:
Q  287 acaacccatatgaatttgtgacccgatgcttctat 321  Q
    |||||||||||||||| ||||||||||||||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctat 48974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 12590375 - 12590192
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||||||| ||||||||||| ||||| || | ||  ||||| |||||||||||||  || |||||||| ||||| ||   ||||||||| |||||||    
T  12590375 gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat 12590276  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttc 203  Q
    | ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  12590275 gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttc 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 284 - 447
Target Start/End: Complemental strand, 12590108 - 12589945
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    |||| |||||||| ||||| ||| || ||||||||||| ||||| | |||||| |||||||||||||| | ||||  ||||| ||| |||||||||||||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 447  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||| |||||  ||||||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacact 12589945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 284 - 447
Target Start/End: Complemental strand, 12483403 - 12483240
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    |||||||||||||||||||| | ||||||||||||||| || |||| ||| |||||||| |||||||| | ||||  ||||| ||| |||||||||||||    
T  12483403 ggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgt 12483304  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 447  Q
    |||||||||| || ||| |||| |||| |||||||||  ||||||| ||||| |||||||||||    
T  12483303 acaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacact 12483240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 12483658 - 12483492
Alignment:
Q  32 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 131  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||| || || |||   |||||||| ||||| || |||||||| |    
T  12483658 tcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatg 12483559  T
Q  132 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 198  Q
    ||||||| ||   ||||||||||||||  || ||||| ||||| ||||| || || |||||| ||||    
T  12483558 cacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatctt 12483492  T

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Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 13448336 - 13448553
Alignment:
Q  17 tgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccac 116  Q
    ||||||||||  || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || || || |||| ||| |    
T  13448336 tgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgc 13448435  T
Q  117 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 216  Q
    |||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||   ||||||||||||||    
T  13448436 aatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctc 13448532  T
Q  217 ttcgaatccctttggcaacca 237  Q
    ||| |||||||| || |||||    
T  13448533 ttcaaatcccttcggtaacca 13448553  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 13440191 - 13440390
Alignment:
Q  35 ttgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcac 134  Q
    ||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||| ||| ||| | || |||| ||| ||||||||||||||  | |    
T  13440191 ttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatcccc 13440290  T
Q  135 ccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaa 234  Q
    |||| ||   ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || ||   |  || ||||||||||||||||||||||||||    
T  13440291 ccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctc---ctaatgtttctctcttcgaatccctttggcaa 13440387  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 442
Target Start/End: Original strand, 13448600 - 13448758
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    ||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||| ||||||||||| |  |||  |   | ||||||||| |||||||    
T  13448600 ggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgt 13448699  T
Q  384 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcaca 442  Q
    |||||||||||||| ||  ||  || || ||||||||||| | |||||||||| |||||    
T  13448700 acaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcaca 13448758  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 13454825 - 13455024
Alignment:
Q  35 ttgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcac 134  Q
    ||||| ||||| ||||| || || |||||||| ||||| ||||| ||    ||||||||||| ||  | || |||| ||| ||||||||||||||  | |    
T  13454825 ttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatcccc 13454924  T
Q  135 ccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaa 234  Q
    |||| ||   ||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||   |||| ||| ||||||| |||||||| |||||    
T  13454925 ccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaa 13455021  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 13455154 - 13455230
Alignment:
Q  367 gcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaa 443  Q
    ||||||||| ||||||||||| ||||||||| ||  ||| ||||| ||||| ||||| |||||||| ||| ||||||    
T  13455154 gcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaa 13455230  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 12641684 - 12641467
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||| ||| ||||| || || |||||||| ||||| |||||||||||||| |||| |||||||||||||||||| ||   ||| ||| |||| ||||    
T  12641684 gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat 12641585  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttc 219  Q
    ||||||| || |||||||||||   |||||| |||||||| |||||||| |||||  ||||||| || ||||| ||||| ||| | | ||||||||||||    
T  12641584 gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatttctctcttc 12641485  T
Q  220 gaatccctttggcaacca 237  Q
    |||||| || ||||||||    
T  12641484 gaatcctttaggcaacca 12641467  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 3417468 - 3417356
Alignment:
Q  285 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 384  Q
    |||||||||||||||||  ||||||||||||||||||  |  |||||||||| || ||||||||||| | ||||  |  |||||||||||| ||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  385 caacactgagtta 397  Q
    |||||||||||||    
T  3417368 caacactgagtta 3417356  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 3417718 - 3417516
Alignment:
Q  32 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 131  Q
    |||||| | ||||| ||||| ||  |||||||||| ||||| ||||| ||||||| |||||||||||||   || |||| ||||||||| ||||||||      
T  3417718 tcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatc 3417619  T
Q  132 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttgg 231  Q
    | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  ||||||||   ||||||||| || |||||||| || |||||||| ||    
T  3417618 cccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgg 3417522  T
Q  232 caacca 237  Q
    ||||||    
T  3417521 caacca 3417516  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 12540699 - 12540836
Alignment:
Q  58 cggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatc 157  Q
    ||||||||| ||||| ||||| || |||| ||||||||| ||| | || || | ||||||||| ||||||||  | ||||| ||   ||||||||| |||    
T  12540699 cggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc 12540798  T
Q  158 ataacttgtggagcccaacccctaataatcaaaccctt 195  Q
     |||| ||||| |||||||||||||| |||||||||||    
T  12540799 ttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 397
Target Start/End: Original strand, 28385571 - 28385684
Alignment:
Q  284 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 383  Q
    ||||||||||||||||||  |||||| ||||||||||   | ||||||||||| || ||||||||||| | |||| ||  || ||||||||| |||||||    
T  28385571 ggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgt 28385670  T
Q  384 acaacactgagtta 397  Q
    |||  |||||||||    
T  28385671 acacaactgagtta 28385684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  148 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 233  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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