View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12146_low_8 (Length: 442)
Name: NF12146_low_8
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 14598370 - 14598775
Alignment:
| Q |
20 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccttaaatcagcaaaacttgcggcctcagccatcgcttcaaaactca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598370 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactca |
14598469 |
T |
|
| Q |
120 |
agagagctcctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598470 |
agagagctcctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcgg |
14598569 |
T |
|
| Q |
220 |
ctccttttcaggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598570 |
ctccttttcaggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataa |
14598669 |
T |
|
| Q |
320 |
aggacggcaaggtcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaggtaattgacatga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14598670 |
aggacggcaaggtcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaagtaattgacatga |
14598769 |
T |
|
| Q |
420 |
gccata |
425 |
Q |
| |
|
|||||| |
|
|
| T |
14598770 |
gccata |
14598775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 14610106 - 14609709
Alignment:
| Q |
20 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccttaaatcagcaaaacttgcggcctcagccatcgcttcaaaactca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || || || | | |
|
|
| T |
14610106 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcagcctcagccatggcctcgaatgtta |
14610007 |
T |
|
| Q |
120 |
agagagctcctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcgg |
219 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14610006 |
aaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcgg |
14609907 |
T |
|
| Q |
220 |
ctccttttcaggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataa |
319 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | | | | |||||||||| | |
|
|
| T |
14609906 |
ctctttatcaggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttgctgtgggatttgtcggggttacaacgtggaatttctcatga |
14609807 |
T |
|
| Q |
320 |
aggacggcaaggtcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaggtaattgacat |
417 |
Q |
| |
|
|||||| | |||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14609806 |
aggacgtctaggtcagtgctacgattaactggagaaagctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaagtaattgacat |
14609709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 12194678 - 12194952
Alignment:
| Q |
20 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccttaaatcagcaaaacttgcggcctcagccatcgcttcaaaactca |
119 |
Q |
| |
|
|||||||| || || |||||||| ||||| | ||| || |||||||| ||||||| || || ||||||||||| ||||| ||||| || |||||| | | |
|
|
| T |
12194678 |
aagtaagattccgggttccttggttcaatgtcgtgcttccgacaaaaaggaacccacaactccgcaaaacttgctgcctcggccatggcctcaaaagtta |
12194777 |
T |
|
| Q |
120 |
agagagctcctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcgg |
219 |
Q |
| |
|
|| | || || || || || |||||||| |||||||| || ||||||||||||||||||| || |||||||||||||| || || ||||| || || |
|
|
| T |
12194778 |
gaagtgaaccgccgtcgtcagagacataacatgcgagtttatcaacagggtaatcaactgctagaattgaaagaatggtatttgcggtaacaaggggtgg |
12194877 |
T |
|
| Q |
220 |
ctccttttcaggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctgg |
294 |
Q |
| |
|
||| ||||| ||||| |||||||||||||| | ||| || || ||||||||| ||||||| |||||| |||| |
|
|
| T |
12194878 |
ctctttttctggatcggcagttgacacaaacatatcaattcccgggagatcagatttccctgttggatttgctgg |
12194952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 44633135 - 44632884
Alignment:
| Q |
29 |
tcaggattccttggctcaatattgtgtttgcgacaaaagggaacccttaaatca-gcaaaacttgcggcctcagccatcgcttcaaaactcaagagagct |
127 |
Q |
| |
|
|||||||| ||||||||||| | |||||| | ||| || ||||||| ||||| |||||||| || | |||||| | |||||||| |||| |||||| |
|
|
| T |
44633135 |
tcaggatttcttggctcaatttggtgttttctacagaaaggaaccca-aaatcttgcaaaactagcagtctcagcaagagcttcaaatgtcaaaagagct |
44633037 |
T |
|
| Q |
128 |
cctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctcctttt |
227 |
Q |
| |
|
|| |||||||| || | ||||||||| | ||| |||||||| ||||||||||| | || || | |||||| || |||||||||||||| ||||| |||| |
|
|
| T |
44633036 |
ccaccatcatcagacaaataacaagcaactttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaagaggtggctcttttt |
44632937 |
T |
|
| Q |
228 |
caggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccct |
280 |
Q |
| |
|
| ||||| |||||||| ||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
44632936 |
ctggatctgcagttgaaacaaagacatcaattccagggagatcagacctccct |
44632884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 41491819 - 41491889
Alignment:
| Q |
29 |
tcaggattccttggctcaatattgtgtttgcgacaaaagggaacccttaaatcagcaaaacttgcggcctc |
99 |
Q |
| |
|
||||| |||||| | ||||| ||||| || |||||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
41491819 |
tcagggttccttaggtcaatgttgtgcttccgacaaaatggaacccacaaatcagcaaaacttgctgcctc |
41491889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University