View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12146_low_9 (Length: 430)
Name: NF12146_low_9
Description: NF12146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12146_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 412
Target Start/End: Complemental strand, 10887453 - 10887065
Alignment:
| Q |
15 |
gctcctcacagtacgctgcactaagcacctcgagtctagtaagatctttagccaccgaagcaggaaacaagtatttaaggttatcacatcccataacact |
114 |
Q |
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| T |
10887453 |
gctcctcacagttcgttgcactaagcaccttgagtctagtaagatctttagccaccgaagcaggaaacaagtatttaaggttatcacattctgtaacact |
10887354 |
T |
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| Q |
115 |
catttcttgtagcacttgaaggnnnnnnnttccttcagggtctttgtcccatacatgctccaggattggtagattagtaagtgacaattttttcaagcga |
214 |
Q |
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| T |
10887353 |
catttcttgtagtacttgaaggaaaaaaattccttcagggtctttgtcccatacatgctccaggattggtagattataaagtaacaattttttcaagcga |
10887254 |
T |
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| Q |
215 |
aattttcccaaagcttttgtgaccattgtgtcatttaaattaaatatgactttcacagcactgcaattcgatacttctaactcttccaaattctcaaagc |
314 |
Q |
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| T |
10887253 |
aattttcccaaagcttttgtgaccattgtgtcatttaaattaaatatgactttcacagcactgcaatctgatacttctaactcgtccaaattctcaaagc |
10887154 |
T |
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| Q |
315 |
aaggaagtaaatgagatggaattgcgtgtactagattgttacgattgtaaagatctgataccaccaaggatgtcaaattgcgaaacatgtactcttgc |
412 |
Q |
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| T |
10887153 |
aaggaagtaaatgagatggaattgcgtgtactagattgttac---------gatatgataccaccaaggatgtcaaattgcgaaacatgtactcttgc |
10887065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 35 - 408
Target Start/End: Complemental strand, 10855275 - 10854911
Alignment:
| Q |
35 |
ctaagcacctcgagtctagtaagatctttagccaccgaagcaggaaacaagtatttaaggttatcacatcccataacactcatttcttgtagcacttgaa |
134 |
Q |
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| T |
10855275 |
ctaagcagctcaagtctagtaagatctttagccaccgatgcaggaaacaaatatttaagggtatcacattcaaaaacattcatttcttgtagcacttgaa |
10855176 |
T |
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| Q |
135 |
ggnnnnnnnttccttcagggtctttgtcccatacatgctccaggattggtagattagtaagtgacaattttttcaagcgaaattttcccaaagcttttgt |
234 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||| |||||||| |
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| T |
10855175 |
ggcaaaaatttccttcagggtctttgtcccatacatgctccaggattggtagatcagaaaaaaacaattttttcaagcgaaatgttcccattgcttttgt |
10855076 |
T |
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| Q |
235 |
gaccattgtgtcatttaaattaaatatgactttcacagcactgcaattcgatacttctaactcttccaaattctcaaagcaaggaagtaaatgagatgga |
334 |
Q |
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| T |
10855075 |
ggcccttgcatcatttatattaaatatgactttcacagcactgcacctcgttacgtgtaactcctccaaattatcaaagcaaggaagtaaatgagatgga |
10854976 |
T |
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| Q |
335 |
attgcgtgtactagattgttacgattgtaaagatctgataccaccaaggatgtcaaattgcgaaacatgtactc |
408 |
Q |
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||| |||| ||||||||||||| |||| |||||||||||| |||||||| ||| ||||||||||||| |
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| T |
10854975 |
attacgtgcactagattgttac-attg--------tgataccaccaaagatgtcaagttgtgaaacatgtactc |
10854911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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