View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12147_high_1 (Length: 359)

Name: NF12147_high_1
Description: NF12147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12147_high_1
NF12147_high_1
[»] chr3 (6 HSPs)
chr3 (8-210)||(30717707-30717909)
chr3 (209-350)||(30717541-30717682)
chr3 (40-111)||(44717077-44717148)
chr3 (40-114)||(26007779-26007853)
chr3 (135-189)||(26007679-26007733)
chr3 (59-107)||(5171099-5171147)
[»] chr1 (5 HSPs)
chr1 (88-189)||(44901416-44901512)
chr1 (215-260)||(36495558-36495603)
chr1 (152-189)||(33185039-33185076)
chr1 (152-189)||(33858188-33858225)
chr1 (152-189)||(33922698-33922735)
[»] chr8 (1 HSPs)
chr8 (113-189)||(5124499-5124575)
[»] scaffold0004 (1 HSPs)
scaffold0004 (134-187)||(228047-228101)
[»] chr5 (2 HSPs)
chr5 (113-189)||(30874658-30874734)
chr5 (214-258)||(30212920-30212964)
[»] chr4 (1 HSPs)
chr4 (110-164)||(30496703-30496757)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 30717909 - 30717707
Alignment:
Q  8 ggagcagcacagaggaaaatcgcaacggagaggatcccggccaatccttgacttttgttggagtttggaattggatgtaatgttttgattaagacttgtg 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30717909 ggagcagcccagaggaaaatcgcaacggagaggatcccggccaatccttgacttgtgttggagtttggaattggatgtaatgttttgattaagacttgtg 30717810  T
Q  108 aatgtttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatactttacctcattattgtaatttg 207  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  30717809 aatgtttttgatttatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttttttatactttacctcattcatgtaatttg 30717710  T
Q  208 tcc 210  Q
    |||    
T  30717709 tcc 30717707  T

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Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 209 - 350
Target Start/End: Complemental strand, 30717682 - 30717541
Alignment:
Q  209 ccgctacccgctatcccactcttggggtcggccgctatccgggattgactacatagaaattaatacatatgaataagaaatgaactggctttgagggcag 308  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717682 ccgctacccgctatcccacttttggggtcggccgctatccgggattgactacatagaaattaatacatatgaataagaaatgaactggctttgagggcag 30717583  T
Q  309 caacatggaaaatatgtacttatttgttatgacacacaggtt 350  Q
    |||||||||||||||| || |||||||||||||||| |||||    
T  30717582 caacatggaaaatatggacctatttgttatgacacataggtt 30717541  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 44717148 - 44717077
Alignment:
Q  40 gatcccggccaatccttgacttttgttggagtttggaattggatgtaatgttttgattaagacttgtgaatg 111  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  44717148 gatcccggccaatccttgaattttgttggtatttggaattggatgtaatgttttgattaagacttgggaatg 44717077  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 26007853 - 26007779
Alignment:
Q  40 gatcccggccaatccttgacttttgttggagtttggaattggatgtaatgttttgattaagacttgtgaatgttt 114  Q
    ||||||||||||||||||| ||||||| |  |||| |||| ||||| ||||||||||||||||||||||||||||    
T  26007853 gatcccggccaatccttgatttttgtttgtatttgaaatttgatgtcatgttttgattaagacttgtgaatgttt 26007779  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 26007733 - 26007679
Alignment:
Q  135 gagttttgagttatttgtttaattttatatcaaatatatggttgtttatacttta 189  Q
    ||||||| |||| ||||||||||||||| | ||||||||| ||||||||| ||||    
T  26007733 gagttttaagttgtttgtttaattttattttaaatatatgtttgtttatatttta 26007679  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 5171147 - 5171099
Alignment:
Q  59 cttttgttggagtttggaattggatgtaatgttttgattaagacttgtg 107  Q
    ||||||||||  |||||| ||| ||||||| ||||||||||||||||||    
T  5171147 cttttgttggtatttggatttgaatgtaatcttttgattaagacttgtg 5171099  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 44901512 - 44901416
Alignment:
Q  88 tgttttgattaagacttgtgaatgtttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatactt 187  Q
    ||||||||||||||||||||     ||||||| ||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  44901512 tgttttgattaagacttgtg-----ttttgatttatgaatgtttcatgagctttgagttatttgtttacttttatattaaatatatggttgtttatattt 44901418  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 36495603 - 36495558
Alignment:
Q  215 cccgctatcccactcttggggtcggccgctatccgggattgactac 260  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  36495603 cccgctatcccacttttggggttggccgctatccgggattgactac 36495558  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 33185076 - 33185039
Alignment:
Q  152 tttaattttatatcaaatatatggttgtttatacttta 189  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33185076 tttaattttatattaaatatatgtttgtttatacttta 33185039  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 33858225 - 33858188
Alignment:
Q  152 tttaattttatatcaaatatatggttgtttatacttta 189  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33858225 tttaattttatattaaatatatgtttgtttatacttta 33858188  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 33922698 - 33922735
Alignment:
Q  152 tttaattttatatcaaatatatggttgtttatacttta 189  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33922698 tttaattttatattaaatatatgtttgtttatacttta 33922735  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 5124499 - 5124575
Alignment:
Q  113 ttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatacttta 189  Q
    ||||||| ||||| |||| |||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  5124499 ttttgatttatgaatgtttcatgagtttttagttatttgtttaattttatactaaatatatgtttgtttatacttta 5124575  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 228047 - 228101
Alignment:
Q  134 tgagttttgagttatttgtttaattttatatcaaatatatgg-ttgtttatactt 187  Q
    |||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  228047 tgagttgtgagttgtttgtttaattttatattaaatatatggtttgtttatactt 228101  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 30874734 - 30874658
Alignment:
Q  113 ttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatacttta 189  Q
    ||||||| ||||  |||| || |||||||| || || | ||||||||||||| ||||||||| ||||||||||||||    
T  30874734 ttttgatttatggatgtttcacgagttttgggtgatatatttaattttatattaaatatatgtttgtttatacttta 30874658  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 30212964 - 30212920
Alignment:
Q  214 acccgctatcccactcttggggtcggccgctatccgggattgact 258  Q
    ||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30212964 acccgatatcccacttttggggtcggccgcaatccaggattgact 30212920  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 30496703 - 30496757
Alignment:
Q  110 tgtttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatat 164  Q
    ||||||| || | ||| |||| |||||||||||||| ||||||||||||||||||    
T  30496703 tgtttttcatatgtgaatgtttcatgagttttgagtcatttgtttaattttatat 30496757  T

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