View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12148_high_1 (Length: 488)
Name: NF12148_high_1
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 45560053 - 45559595
Alignment:
| Q |
18 |
agtatcgagatacaagtagcgaagttgagtgatgttggcaatagtagttggaatggaaccagtaagttggttaaaatagagatcaagaaagtgaaggtga |
117 |
Q |
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| T |
45560053 |
agtatcgagatacaagtagcgaagttgagtgatgttggcaatagtagttggaatggaaccagtaagttggttgaaatagagatcaagaaagtgaaggtga |
45559954 |
T |
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| Q |
118 |
gggatttgagttaagaaatagggaaatggaccagtgagtagattagtagaaaggctgagataggtgagtttgtggaggttagagaatgagtgaggtattt |
217 |
Q |
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| T |
45559953 |
gggatttgagttaagaaatagggaaatggaccagtgagtagattagtagaaaggctgagataggtgagtttgtggaggttagagaatgagtgaggtattt |
45559854 |
T |
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| Q |
218 |
ggccggtaaagtaattagaagaaaggtctaaatagttgaggtgtgtgcaattagaaatttcaggtcgtaatggagcatgaatgttaaaagaggaaaggtt |
317 |
Q |
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| T |
45559853 |
gaccggtaaagtaattagaagaaaggtctaagtagttgaggtgtgtgcaattagaaatttcaggtcgtaatggagcatgaatgttacaagaggaaaggtt |
45559754 |
T |
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| Q |
318 |
gagagagactacacggtgagtggaagggttgcatttgacacccttccatgagcatggtgttgaatgagatggaatccatgttgagtttatggaaggagga |
417 |
Q |
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| T |
45559753 |
gagagagactacacggtgagtggaagggttgcatttgacacccttccatgagcatggtgttgaatgagatggaatccatgttgagtttatggaaggagga |
45559654 |
T |
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| Q |
418 |
actgatgtccagtgggacatgaatgacaagagtgctaccccatctgagttcagtgcaca |
476 |
Q |
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| T |
45559653 |
actgatgtccagtgggacatgaatgacaagagtgctaccccatctgagttcagtgcaca |
45559595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 468
Target Start/End: Original strand, 46388273 - 46388387
Alignment:
| Q |
354 |
gacacccttccatgagcatggtgttgaatgagatggaatccatgttgagtttatggaaggaggaactgatgtccagtgggacatgaatgacaagagtgct |
453 |
Q |
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| T |
46388273 |
gacacacttccatgaacatggtgtggagtgagaatgaatttatgtagagtttatgggaggaggagccgatgtccagtgcctggtgaatgacatgagtgct |
46388372 |
T |
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| Q |
454 |
accccatctgagttc |
468 |
Q |
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| T |
46388373 |
accccgtttgagttc |
46388387 |
T |
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