View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12148_high_2 (Length: 428)
Name: NF12148_high_2
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 28102469 - 28102051
Alignment:
| Q |
1 |
caagtaaccttctcatgacatgactagacttatatattttataaagggcatgtccacaaaacttggttgatcttgaataagagagggggacacaagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102469 |
caagtaaccttctcatgacatgactagacttatatattttataaagggcatgtccacaaaacttggttgatcttgaataagagagggggacacaagaaaa |
28102370 |
T |
|
| Q |
101 |
tctgtcagcagagtttnnnnnnnnnnnnnnnnntgaatttgggatgtggtgatgagggtggtggaccttgtggagcctgcaagtttttgagaagaaagtg |
200 |
Q |
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| T |
28102369 |
tctgtcagcagagtttagagagagagagaga--tggatttgggatgtggtgatgagggtggtggaccttgtggagcctgcaagtttttgaggagaaagtg |
28102272 |
T |
|
| Q |
201 |
tgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtgctcattttgctgcagttcataaggtttttggtgctagcaatgct |
300 |
Q |
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| T |
28102271 |
tgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtgctcattttgctgcagttcataaggtttttggtgctagcaatgct |
28102172 |
T |
|
| Q |
301 |
gctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactctttgctatgaggctcttgctagggctactgaccctgtttatggtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102171 |
gctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactctttgctatgaggctcttgctagggctactgaccctgtttatggtt |
28102072 |
T |
|
| Q |
401 |
gtgttgctcacctctctgctc |
421 |
Q |
| |
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| T |
28102071 |
gtgttgctcacctctttgctc |
28102051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 157 - 411
Target Start/End: Original strand, 13286781 - 13287029
Alignment:
| Q |
157 |
ggtggtggaccttgtggagcctgcaagtttttgagaagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtg |
256 |
Q |
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|||||||| |||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| | ||||||| | |
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| T |
13286781 |
ggtggtgggccttgtggtgcttgcaagtttttgaggagaaagtgtgtaaaaggttg---catatttgcaccatattttgattca---gaccaaggaacgg |
13286874 |
T |
|
| Q |
257 |
ctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactct |
356 |
Q |
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||||||||| ||||||||||| || ||||||||||| ||||| |||| |||||| |||||||||| |||||| ||||||||||||||||||||||| |
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| T |
13286875 |
ttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactct |
13286974 |
T |
|
| Q |
357 |
ttgctatgaggctcttgctagggctactgaccctgtttatggttgtgttgctcac |
411 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13286975 |
ttgctatgaagctcttgctagggctagagaccctgtttatggttgtgttgctcac |
13287029 |
T |
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