View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12148_high_4 (Length: 398)
Name: NF12148_high_4
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 27543356 - 27542985
Alignment:
| Q |
12 |
agagagagtttgattatattgaaggaagtgaaaaggggccacatcattggggggagctaaaagaagaatgggcagcttgtaaacatggagacatgcaatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27543356 |
agagagagtttgattatattgaaggaagtgaaaagggaccacatcattggggggagctaaaagaagaatgggcagcttgtaaacatggagacatgcaatc |
27543257 |
T |
|
| Q |
112 |
tcccatagatttgtctaatgagagagtcaaaattattccaaactatcgtcaagttatcaaaaccaaatataaatcttctaatgccactattatcaataga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27543256 |
tcccatagatttgtctaatgagagagtcaaaattattccaaactatcgtcaagttatcaagaccaaatataaatcttctaatgccactattatcaataga |
27543157 |
T |
|
| Q |
212 |
ggccatgatattgcggtgagcatacatatttctatgaccttttgttgatgttgttgttaaaagagnnnnnnnnggtagaaccctactccaacaaatgatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
27543156 |
ggccatgatattgcggtgagcatacatatttctatgaccttttgttgatgttgttgttaaaagagttttttttggcagaaccctactccaacaaatgatt |
27543057 |
T |
|
| Q |
312 |
gtatgattgatccctaaaatcggatagaattatatatgggaaatgttaacgagtatcctcgaggcacttttt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |
|
|
| T |
27543056 |
gtatgattgatccctaaaatcggatagaattatatatggaaattgttaacaagtatcctcgagacacttttt |
27542985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University