View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12148_high_6 (Length: 361)
Name: NF12148_high_6
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 180200 - 179899
Alignment:
| Q |
19 |
cataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggatt |
118 |
Q |
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| T |
180200 |
cataggaagcaaaggagatgatgtcagcctttgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggatt |
180101 |
T |
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| Q |
119 |
gggagcatagacaccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgact |
217 |
Q |
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| T |
180100 |
gggagcatagacaccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgact |
180001 |
T |
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| Q |
218 |
tgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagatatgatttggtgttggaagggttggtggccatgt |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180000 |
tgacgtttccaagcacgaaaatttttgctagacaatttgaacgtgattgaggcatttagaataagatatgatttggtgttggaagggttggtggccatgt |
179901 |
T |
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| Q |
318 |
tg |
319 |
Q |
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|| |
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| T |
179900 |
tg |
179899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 1700584 - 1700282
Alignment:
| Q |
19 |
cataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggatt |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1700584 |
cataggaagcaaaggagatgctgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtaatcaggatt |
1700485 |
T |
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| Q |
119 |
gggagcatagacaccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgact |
217 |
Q |
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| T |
1700484 |
gggagcagagacaccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgact |
1700385 |
T |
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| Q |
218 |
tgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagatatgatttggtgttggaagggttggtggccatgt |
317 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1700384 |
tgacgtttccaagcacggaaatttttgcgagacagtttgaacgtgattgaggcatttagaataagagatgatttggtgttggaagggttggtggccatgt |
1700285 |
T |
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| Q |
318 |
tga |
320 |
Q |
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||| |
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| T |
1700284 |
tga |
1700282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 5399353 - 5399261
Alignment:
| Q |
19 |
cataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
111 |
Q |
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||||||| ||||| || || |||| || |||||||| ||||||| ||||||||||||||| || ||||||| ||||||||| |||||||||| |
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| T |
5399353 |
cataggaggcaaatgatatactgtctgcttctgtcatagaggagataagaagattgatgatgagttgatcaatagtgaaccaatttgtgtatt |
5399261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 3540350 - 3540258
Alignment:
| Q |
19 |
cataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
111 |
Q |
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||||||| ||||| || || |||| || |||||||| |||||| ||||||||||||||| || || |||| ||||||||| |||||||||| |
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| T |
3540350 |
cataggaggcaaatgatatactgtctgcttctgtcataaaggagataagaagattgatgatgagttggtcaatagtgaaccaatttgtgtatt |
3540258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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