View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12148_high_7 (Length: 299)
Name: NF12148_high_7
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_7 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
| [»] scaffold0687 (1 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 18417733 - 18418014
Alignment:
| Q |
8 |
agaacctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
107 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417733 |
agaacctctgtttgatccttcactgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
18417832 |
T |
|
| Q |
108 |
aaggacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttct |
206 |
Q |
| |
|
|| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
18417833 |
aaagacaaagttgttcttaaagagtatgttgatgagcaaggctggaccaaattcctacagcttcgtgagagacactacccaaagcttattcaagctttct |
18417932 |
T |
|
| Q |
207 |
atttcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417933 |
atttcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
18418014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 30447723 - 30447445
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30447723 |
acctctgtttgatccttctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
30447624 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30447623 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaagctttctatt |
30447524 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30447523 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
30447445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 30457208 - 30456930
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30457208 |
acctctgtttgatccttctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
30457109 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30457108 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaagctttctatt |
30457009 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30457008 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
30456930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 24419484 - 24419762
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24419484 |
acctctgtttgatccttctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
24419583 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24419584 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaaactttctatt |
24419683 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24419684 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggaggttgagatacgtctcactccacaggt |
24419762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 26819167 - 26819445
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26819167 |
acctctgtttgatccttctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
26819266 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26819267 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaagctttctatt |
26819366 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26819367 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
26819445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 54692918 - 54692640
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54692918 |
acctctgtttgatcattctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
54692819 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54692818 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaagctttctatt |
54692719 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54692718 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
54692640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 28354684 - 28354406
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28354684 |
acctctgtttgatccttctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
28354585 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28354584 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaagctttctatt |
28354485 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28354484 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
28354406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 97425 - 97147
Alignment:
| Q |
11 |
acctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaag |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97425 |
acctctgtttgatcattctctgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaa |
97326 |
T |
|
| Q |
111 |
gacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatt |
209 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97325 |
gacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttgtccaagctttctatt |
97226 |
T |
|
| Q |
210 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97225 |
tcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
97147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0687 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0687
Description:
Target: scaffold0687; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 5395 - 5676
Alignment:
| Q |
8 |
agaacctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5395 |
agaacctctgtttgatccttctctgaaaaaggagttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
5494 |
T |
|
| Q |
108 |
aaggacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttct |
206 |
Q |
| |
|
|| ||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5495 |
aaagacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacattacccaaagcttgtccaagctttct |
5594 |
T |
|
| Q |
207 |
atttcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5595 |
atttcatggcagaagcgtaccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
5676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 9604 - 9885
Alignment:
| Q |
8 |
agaacctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9604 |
agaacctctgtttgatccttctctgaaaaaggagttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
9703 |
T |
|
| Q |
108 |
aaggacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttct |
206 |
Q |
| |
|
|| ||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9704 |
aaagacaaagtcgttcttaaggagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacattacccaaagcttgtccaagctttct |
9803 |
T |
|
| Q |
207 |
atttcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9804 |
atttcatggcagaagcgtaccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
9885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 4112214 - 4111933
Alignment:
| Q |
8 |
agaacctgtgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
107 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4112214 |
agaacctctgtttgatccttcactgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaaggtattatgattttgtcaagctggaa |
4112115 |
T |
|
| Q |
108 |
aaggacaaagctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttct |
206 |
Q |
| |
|
|| ||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
4112114 |
aaagacaaagttgttcttaaagagtatgttgatgagcaaggctggaccaaatttctacagcttcgtgagagacactacccaaagcttattcaagctttct |
4112015 |
T |
|
| Q |
207 |
atttcatggcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4112014 |
atttcatggcagaagcataccctgaggaaagcttaatagtgtctaggatataggatgttgagatacgtctcactccacaggt |
4111933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 15182404 - 15182677
Alignment:
| Q |
16 |
tgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaggacaa |
115 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
15182404 |
tgtttgatccatcactgaaaaaggatttcaaagaaaaatggggaaatcggtcaattggaattggaagatactatgattttgtcaagctggaaaaagacaa |
15182503 |
T |
|
| Q |
116 |
agctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatttcatg |
214 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
15182504 |
agttgttcttaaagagtatgttgatgagcaaggctggaccaaattcctacagcttcgtgagagacactacccaaagcttattcaagctttctatttcatg |
15182603 |
T |
|
| Q |
215 |
gcagaagcataccctgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15182604 |
gcagaagcataccctgaggaaagcttaatagtgtctaggatcaaggatgttgagatacgtctcactccacaggt |
15182677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 22453 - 22224
Alignment:
| Q |
16 |
tgtttgatccttctctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaggacaa |
115 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
22453 |
tgtttgatccatcactgaaaaaggatttcaaagaaaaatggggaaataggtcaattggaattggaagttattatgattttgtcaagctggaaaaagacaa |
22354 |
T |
|
| Q |
116 |
agctgttcttaaagagt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatttcatg |
214 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22353 |
agttgttcttaaagagtatgttgatgagcaaggctggaccaaattcctacagctttgtgagagacactacccaaagcttattcaagctttctatttcatg |
22254 |
T |
|
| Q |
215 |
gcagaagcataccctgaggaaagcttaata |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22253 |
gcagaagcataccctgaggaaagcttaata |
22224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 20752360 - 20752619
Alignment:
| Q |
30 |
ctgaaaaaggatttcaaagaaaaatgggggaataggtcaattggaattggaaggtattatgattttgtcaagctggaaaaggacaaagctgttcttaaag |
129 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
20752360 |
ctgaaaaaggacttcaaggagaaatggggaaataggtcaattggagttggaagatattacgactttgtcaagctggaaaaagacaaagttgttcttaaag |
20752459 |
T |
|
| Q |
130 |
agt-tgttgataagcaaggctggaccaaattcctacaacttcgtgagagacactacccaaagcttgtccaagctttctatttcatggcagaagcataccc |
228 |
Q |
| |
|
||| ||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
20752460 |
agtatgttgatgagcaaggcaggaccaagttcctacaacttcgtaagagacactacccaaagctcattcaagctttctacttcatggtagaagcataccc |
20752559 |
T |
|
| Q |
229 |
tgaggaaagcttaatagtgtctaggattaaggatgttgagatacgtctcactccacaggt |
288 |
Q |
| |
|
|||||||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
20752560 |
tgaggaaagccttattgtgtctagaatcaaggatgtagagattcgtctcactccacaggt |
20752619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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