View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12148_high_8 (Length: 276)
Name: NF12148_high_8
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 34547868 - 34547632
Alignment:
| Q |
22 |
catccaaataaagttcttaaacaggaaaaagccttatatcaaaattcgtatgccaattgttaaaagaactgcccctgtgattagagtatttttaatgacc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
34547868 |
catccaaataaagttcttaaacaggaaaaagccttatatcaaaattcgtatgccaattgttaaaagaactgtccctgtgattagagtatttttaatggcc |
34547769 |
T |
|
| Q |
122 |
gtaccttcggaatatttttcttccactaataaaagtttactttagttgattaaccgggttgtgtctagggtcagaacatgcctcaaactcaaagaacaat |
221 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34547768 |
gtaccttcggaataattttcttccactaataaaagtttactttagttgattaaccggg--ctgtctagggtcagaacatgcctcaaactcaaagaacaat |
34547671 |
T |
|
| Q |
222 |
gacataagtattaacatattacatcggtggtagcagaac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34547670 |
gacataagtattaacatattacatcggtggtagcagaac |
34547632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 34551121 - 34551023
Alignment:
| Q |
62 |
aaaattcgtatgccaattgttaaaagaactgcccctgtgattagagtatttttaatgaccgtaccttcggaatatttttcttccactaataaaagtttac |
161 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||| | ||| |||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
34551121 |
aaaattcctatgccaattgttaaaagaattgctcctataatttgagtatttttaacagccgtacc-tcggaatatttttcttccataaataaaaatttac |
34551023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University