View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12148_high_9 (Length: 250)
Name: NF12148_high_9
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 49247601 - 49247818
Alignment:
| Q |
18 |
agacacaaaggaggaagataatgtggccacggaagaagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcct |
117 |
Q |
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| T |
49247601 |
agacacaaaggaggaagataatgtggccaaggaagaagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcct |
49247700 |
T |
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| Q |
118 |
aaggaagaaggaaccaaggaaatggctccgcaagcagaaaccaaagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaag |
217 |
Q |
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| T |
49247701 |
aaggaagaaggaaccaaggaaatggctcagcaagcagaaaccaaagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaag |
49247800 |
T |
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| Q |
218 |
aggtgtctaaggaagaag |
235 |
Q |
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| T |
49247801 |
aggtgtctaaggaagaag |
49247818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 49247744 - 49247825
Alignment:
| Q |
53 |
aagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaa |
134 |
Q |
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| T |
49247744 |
aagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaa |
49247825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 49247763 - 49247828
Alignment:
| Q |
153 |
agaaaccaaagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaaga |
218 |
Q |
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| T |
49247763 |
agaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaaaga |
49247828 |
T |
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