View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12148_low_1 (Length: 615)

Name: NF12148_low_1
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12148_low_1
NF12148_low_1
[»] chr4 (28 HSPs)
chr4 (270-607)||(20649987-20650326)
chr4 (272-525)||(38011457-38011714)
chr4 (18-113)||(32344703-32344798)
chr4 (268-527)||(18402684-18402941)
chr4 (179-259)||(20649874-20649955)
chr4 (269-576)||(44311590-44311898)
chr4 (272-527)||(2814886-2815142)
chr4 (446-590)||(41421301-41421447)
chr4 (268-350)||(1745427-1745510)
chr4 (373-525)||(29847730-29847881)
chr4 (474-594)||(32338350-32338471)
chr4 (471-528)||(41839646-41839703)
chr4 (471-525)||(44136897-44136951)
chr4 (381-497)||(35260066-35260182)
chr4 (471-525)||(5383821-5383874)
chr4 (471-525)||(44206908-44206961)
chr4 (365-409)||(22065676-22065720)
chr4 (443-523)||(27433335-27433415)
chr4 (268-324)||(44136802-44136860)
chr4 (482-524)||(10330011-10330053)
chr4 (471-524)||(3674379-3674432)
chr4 (268-322)||(25100372-25100428)
chr4 (437-486)||(29459963-29460012)
chr4 (471-523)||(2406488-2406540)
chr4 (471-525)||(21081649-21081702)
chr4 (460-525)||(22065814-22065879)
chr4 (280-334)||(30257435-30257491)
chr4 (270-324)||(41839740-41839796)
[»] chr7 (9 HSPs)
chr7 (270-525)||(28002635-28002893)
chr7 (268-525)||(10623342-10623597)
chr7 (268-497)||(16994470-16994703)
chr7 (268-525)||(27900135-27900395)
chr7 (471-528)||(9957294-9957351)
chr7 (471-528)||(20118166-20118223)
chr7 (471-523)||(5907100-5907152)
chr7 (279-333)||(10019740-10019796)
chr7 (279-340)||(28302137-28302200)
[»] chr1 (27 HSPs)
chr1 (270-525)||(48563248-48563507)
chr1 (443-525)||(18628877-18628957)
chr1 (471-607)||(15309132-15309267)
chr1 (472-525)||(26759458-26759511)
chr1 (471-525)||(11871511-11871565)
chr1 (471-525)||(23777125-23777178)
chr1 (422-528)||(25023298-25023404)
chr1 (471-525)||(33323983-33324037)
chr1 (471-519)||(42241477-42241525)
chr1 (475-525)||(26925027-26925077)
chr1 (270-324)||(18628967-18629023)
chr1 (270-324)||(50959523-50959579)
chr1 (471-523)||(14393245-14393297)
chr1 (366-480)||(52148913-52149029)
chr1 (438-525)||(2688246-2688330)
chr1 (268-324)||(8326998-8327056)
chr1 (471-525)||(16256560-16256613)
chr1 (471-528)||(30052525-30052582)
chr1 (268-300)||(26762256-26762288)
chr1 (268-324)||(33323887-33323945)
chr1 (279-354)||(2688415-2688492)
chr1 (438-524)||(16219283-16219362)
chr1 (471-525)||(19757843-19757896)
chr1 (270-324)||(26925118-26925174)
chr1 (471-523)||(14167771-14167822)
chr1 (268-321)||(15394632-15394687)
chr1 (268-321)||(16256465-16256520)
[»] chr8 (14 HSPs)
chr8 (272-593)||(41566177-41566503)
chr8 (268-525)||(1029533-1029793)
chr8 (471-599)||(18003727-18003856)
chr8 (268-333)||(11954587-11954654)
chr8 (471-524)||(10659105-10659158)
chr8 (471-528)||(14442516-14442574)
chr8 (478-528)||(14575292-14575342)
chr8 (385-480)||(11954446-11954542)
chr8 (442-598)||(13399692-13399849)
chr8 (436-523)||(588609-588695)
chr8 (436-523)||(625227-625313)
chr8 (475-524)||(8869817-8869866)
chr8 (270-324)||(10659195-10659251)
chr8 (271-307)||(5950154-5950190)
[»] chr2 (14 HSPs)
chr2 (268-511)||(39228890-39229136)
chr2 (267-525)||(12419334-12419596)
chr2 (267-525)||(12431394-12431656)
chr2 (428-525)||(39711496-39711592)
chr2 (268-590)||(5136179-5136498)
chr2 (269-525)||(14694904-14695164)
chr2 (438-525)||(18481914-18481999)
chr2 (385-527)||(4724454-4724597)
chr2 (471-528)||(9848195-9848252)
chr2 (279-350)||(4730702-4730775)
chr2 (275-324)||(9848108-9848159)
chr2 (471-593)||(38002108-38002232)
chr2 (471-525)||(36254668-36254723)
chr2 (471-524)||(35114486-35114538)
[»] chr5 (11 HSPs)
chr5 (383-524)||(19932329-19932472)
chr5 (268-525)||(43168550-43168808)
chr5 (472-593)||(2770819-2770941)
chr5 (475-525)||(12466262-12466312)
chr5 (471-521)||(34793296-34793346)
chr5 (267-336)||(18274017-18274088)
chr5 (367-406)||(17589795-17589834)
chr5 (279-334)||(24099433-24099490)
chr5 (270-324)||(12566904-12566960)
chr5 (365-409)||(3925424-3925468)
chr5 (571-607)||(35077966-35078002)
[»] chr6 (13 HSPs)
chr6 (365-527)||(31946272-31946436)
chr6 (284-404)||(6257236-6257357)
chr6 (268-511)||(3008661-3008899)
chr6 (437-522)||(32718098-32718182)
chr6 (272-525)||(6189647-6189900)
chr6 (315-529)||(9535068-9535282)
chr6 (268-320)||(31304021-31304075)
chr6 (387-599)||(29333791-29334004)
chr6 (443-522)||(28553995-28554073)
chr6 (275-320)||(29032697-29032744)
chr6 (481-525)||(30625582-30625626)
chr6 (467-510)||(6257414-6257457)
chr6 (272-324)||(8210006-8210060)
[»] chr3 (13 HSPs)
chr3 (381-522)||(35739985-35740125)
chr3 (438-525)||(24405199-24405284)
chr3 (438-525)||(44558474-44558561)
chr3 (366-409)||(557465-557508)
chr3 (467-525)||(47005748-47005806)
chr3 (436-521)||(9192326-9192411)
chr3 (271-324)||(47005839-47005894)
chr3 (367-409)||(8819533-8819575)
chr3 (268-335)||(24405031-24405100)
chr3 (271-352)||(17768059-17768142)
chr3 (271-352)||(19069360-19069443)
chr3 (367-407)||(9192482-9192522)
chr3 (279-307)||(28180538-28180566)
[»] scaffold0003 (3 HSPs)
scaffold0003 (269-324)||(353236-353293)
scaffold0003 (436-525)||(353145-353234)
scaffold0003 (558-594)||(353075-353111)
[»] scaffold0174 (2 HSPs)
scaffold0174 (438-525)||(30744-30828)
scaffold0174 (279-349)||(30582-30654)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 270 - 607
Target Start/End: Original strand, 20649987 - 20650326
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaact 367  Q
    |||||||| |||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  20649987 gaaagggtttggttattaacgtattgaactcatccctcaatctgagttcttacgcatctgtttgaaacttgtggtgtttggtgatgttgcttcttcgact 20650086  T
Q  368 ctctgatgttccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgccacactctggtactatatgctagaaagagctcttacgcttgctgctt 467  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20650087 ctctgatgttctgggtctgttgagatctgcaggtttcaagccatcatgtttgccacactctggtactatatgctcgaaagagctcttacgcttgctgctt 20650186  T
Q  468 tgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatttttgcattcgttcactattc 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||    
T  20650187 tgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccgttcgccagtttgaagcttgaactattcttgcattcgttcactattc 20650286  T
Q  568 atattttttgtaacttggtttcgcgcttgtacacaggttc 607  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  20650287 atattttttgtaacttggtttcgcgcctgtacgcaggttc 20650326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 272 - 525
Target Start/End: Complemental strand, 38011714 - 38011457
Alignment:
Q  272 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaactct 369  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||| ||  ||||||| || || |||||||||||  |   | |||  |||||    
T  38011714 aagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaagctggttgtgtttggtgacctgattgcttagactct 38011615  T
Q  370 ctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctt 467  Q
    |||||||| || |||||||||||||||||||||||||||| |||  ||| ||| ||||||||||| |   |||| ||||||||| ||| |||||||||||    
T  38011614 ctgatgtttccaggtctgttgagatctgcaggtttcaagttgtctcgttcgcctacactctggtatttggtgctcgaaagagcttttatgcttgctgctt 38011515  T
Q  468 tgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
     | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  38011514 agttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcg 38011457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 32344798 - 32344703
Alignment:
Q  18 atggaaaggtagctctggattttagttatgatagcgaagaaagtggtagagtttgggtaatctttatgattattattatgtgataaaagttatcca 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32344798 atggaaaggtagctatggattttagttatgatagcgaagaaagtgatagagtttgggtaatctttatgattattattatgtgataaaagttatcca 32344703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 268 - 527
Target Start/End: Complemental strand, 18402941 - 18402684
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || |||||  || |    |||||||||||  |  ||||||       
T  18402941 ccgaaagggtctggttactaacgtattgaactcatccatcgatctgagttcttacatgtttgttttgaatt----gtgtttggtgacatgacttctttgt 18402846  T
Q  366 ctctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgccacactctggtactatatgctagaaagagctcttacgcttgctg 464  Q
    |||||||||||| || | | ||||||||||||||| |||||||||||| ||| ||| ||||  || |||| ||| || ||||||||| ||| ||||||||    
T  18402845 ctctctgatgtttccagatttgttgagatctgcagatttcaagtcgtcttgtctgctacacattgatactttatactcgaaagagct-ttatgcttgctg 18402747  T
Q  465 ctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtc 527  Q
    ||||| |||||||| ||||| |||| ||| |||| ||  |||||||| |||||||||||||||    
T  18402746 ctttgttcagggagttgttgtcactaggagtttgatattgtgttggcggtcgatccattcgtc 18402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 20649874 - 20649955
Alignment:
Q  179 tttcagagattgggtggttttggatgtg-cctcttgtggttcggtttgcgattcatcaatctgaaagggtctgtttgtgttt 259  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20649874 tttcagagattgggtggttttggatgtggcctcttgtggttcggtttgcgattcatcaacctgaaagggtctgtttgtgttt 20649955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 576
Target Start/End: Complemental strand, 44311898 - 44311590
Alignment:
Q  269 cgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgat--gttgcttcttca 364  Q
    ||||||| | |||||||||| |||||  ||||||| |||  ||||||||||||||||||| ||  ||||| || ||||| |||| |  |||  | ||||     
T  44311898 cgaaaggttatggttactaatgtattagactcatcactcgatctgagttcttacgcgtctcttgaaaact-gttgtgttgggtggtcggtttgtccttcg 44311800  T
Q  365 actctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgc 462  Q
    | ||||||||||| || | ||||||||| |||||||||||||||  |||| |  |||  ||||| |||||||   |||| ||||||||||||| ||||||    
T  44311799 attctctgatgtttccagatctgttgagttctgcaggtttcaaggagtcacgactgcttacactttggtact---tgctcgaaagagctcttatgcttgc 44311703  T
Q  463 tgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatttttgcattcgttcac 562  Q
    ||||| | ||||||||||| |||||||||||||||| ||||||| |||| ||||||||||||| || ||| ||   | |||| ||||||||   ||||||    
T  44311702 tgctt-gttcagggagctgatggcacttggattttgataccgtgctggcggtcgatccattcgccatttttaaatcctaactgtttttgcagaagttcac 44311604  T
Q  563 tattcatatttttt 576  Q
    | ||||||||||||    
T  44311603 tcttcatatttttt 44311590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 272 - 527
Target Start/End: Complemental strand, 2815142 - 2814886
Alignment:
Q  272 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaactct 369  Q
    ||||||||||||||||| |||||| ||||||||  |  | ||||||||||||||| ||||||||    || || ||||||    |  || |||| |||||    
T  2815142 aagggtctggttactaatgtattggactcatcctacgatatgagttcttacgcgtatgtttgaattccgttgtctttggttgcttaactgcttcgactct 2815043  T
Q  370 ctgatgttccg-ggtctgttgagatctgcaggtttcaagtcgtcatgtttgccacactctggtactatatgctagaaagagctcttacgcttgctgcttt 468  Q
    ||||||||    ||||||||||| |||||||||||||||||||| ||| | ||  || |||||| | |||||||||||||||| ||| | ||| ||  ||    
T  2815042 ctgatgttttaaggtctgttgaggtctgcaggtttcaagtcgtcttgtattcct-acactggtatt-tatgctagaaagagctgttatgtttgatgtctt 2814945  T
Q  469 gctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtc 527  Q
    |  ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2814944 gtgcagggagttgttggcacttggattttgataccgtgttggcaatcgatccattcgtc 2814886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 590
Target Start/End: Complemental strand, 41421447 - 41421301
Alignment:
Q  446 agagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg-tcagtttgaagctcgaact 544  Q
    |||||||||  |||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| || |  || |||| | | ||||    
T  41421447 agagctcttttgctttctgctttgttcagggagctgttggcacgtggattttgttaccgtgttggcggtcgatccatacgctatgtatgaatccctaact 41421348  T
Q  545 att-tttgcattcgttcactattcatattttttgtaacttggtttcg 590  Q
     || ||| ||| |||||||| ||||| ||| ||||||||||||||||    
T  41421347 gttctttacatacgttcacttttcatctttgttgtaacttggtttcg 41421301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 1745427 - 1745510
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 350  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||| || ||||| ||| ||||||||||    
T  1745427 ccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgtctcttggaaac-tgttgtgtttggtg 1745510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 373 - 525
Target Start/End: Complemental strand, 29847881 - 29847730
Alignment:
Q  373 atgttccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgccac-actctggtactatatgctagaaagagctcttacgcttgctgctttgct 471  Q
    ||||||||| |||||||||||||||||| |||||| |||||||  |||| | ||| |||| ||  ||||| |||| |||| ||| |||||||| | || |    
T  29847881 atgttccggatctgttgagatctgcaggcttcaaggcgtcatgactgcctccactttggttctc-atgctcgaaaaagcttttatgcttgctggtgtgtt 29847783  T
Q  472 cagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||| ||||||||||| |||| |||||||||||  |||||||||||||    
T  29847782 cagggagctgctggcacttgga-tttgataccgtgttggtggtcgatccattcg 29847730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 594
Target Start/End: Original strand, 32338350 - 32338471
Alignment:
Q  474 gggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactat--ttttgcattcgttcactattcatat 571  Q
    |||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| || ||| |  ||  |||| |  ||||||| | ||||||| |||||||    
T  32338350 gggagcggttggcacttggattttgttaccatgttggcggtcaatccattcgccatttttatactttaactgttcttttgcaat-gttcacttttcatat 32338448  T
Q  572 tttttgtaacttggtttcgcgct 594  Q
    |||||||||||||||||||||||    
T  32338449 tttttgtaacttggtttcgcgct 32338471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 41839703 - 41839646
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  41839703 tcagggagctattgacacttggattttgttaccgtgttggcggtcgatccattcgtca 41839646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 44136897 - 44136951
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  44136897 tcagggagctgttggcactaggattttgttaccgtgttggcggtcaatccattcg 44136951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 497
Target Start/End: Complemental strand, 35260182 - 35260066
Alignment:
Q  381 ggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagc 479  Q
    ||||||||||||||| |||||||| |||| || ||| |||| ||||| || || |  ||||| ||||||||| ||| ||||||||||||| ||||| |||    
T  35260182 ggtctgttgagatctccaggtttctagtcatcttgtctgcctacactttg-tatttgatgctcgaaagagcttttatgcttgctgctttgttcaggcagc 35260084  T
Q  480 tgttggcacttggatttt 497  Q
    |||||||||||| |||||    
T  35260083 tgttggcacttgaatttt 35260066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 5383821 - 5383874
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  5383821 tcagggagctgttgacacttggattt-gttaccgtgttggcggtcgatccattcg 5383874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 44206961 - 44206908
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  44206961 tcagagagctgttggcacttggattt-gttaccgtgttggcggtcgatccattcg 44206908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 22065676 - 22065720
Alignment:
Q  365 actctctgatgttccgggtctgttgagatctgcaggtttcaagtc 409  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  22065676 actctctgatgttccaggtctgttgagatctgcaggcttcaagtc 22065720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 523
Target Start/End: Original strand, 27433335 - 27433415
Alignment:
Q  443 gaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    ||||||||| ||| |||||| | |||| |||||||| | ||||||||||||||||| || ||||||| |||| ||||||||    
T  27433335 gaaagagcttttatgcttgcggatttgttcagggagtttttggcacttggattttgatatcgtgttgacagttgatccatt 27433415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 44136802 - 44136860
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    ||||||||||||||||||| |||||||| |||||||||||  || ||||||||||||||    
T  44136802 ccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 10330011 - 10330053
Alignment:
Q  482 ttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  10330011 ttggcacttggatttttttaccgtgttggtagtcgatccattc 10330053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 3674432 - 3674379
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||||||||||||| ||||| |||| || ||||||||||| |||||||||||||    
T  3674432 tcagggagctgttgacactttgattctgataccgtgttggtagtcgatccattc 3674379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 25100372 - 25100428
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgc 322  Q
    |||||||||||||||| || ||||||||||||||||||||  |||||||| ||||||    
T  25100372 ccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacgc 25100428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 29460012 - 29459963
Alignment:
Q  437 atgctagaaagagctcttacgcttgctgctttgctcagggagctgttggc 486  Q
    ||||| ||||||||||||| ||||||||||||| |||||||| |||||||    
T  29460012 atgctcgaaagagctcttatgcttgctgctttgttcagggagttgttggc 29459963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 523
Target Start/End: Complemental strand, 2406540 - 2406488
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    |||||||| ||||||||||| ||| ||| |||||||||||| |||||||||||    
T  2406540 tcagggaggtgttggcacttagatgttgataccgtgttggcggtcgatccatt 2406488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 21081649 - 21081702
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||||||| | || ||||||||||| |||||||||||||| |||||||||||||    
T  21081649 tcagggagccgatgacacttggattt-gttaccgtgttggcggtcgatccattcg 21081702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 22065814 - 22065879
Alignment:
Q  460 tgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||| | |||| | |||||| || ||||| ||| |||||||||||| |||||||||||||    
T  22065814 tgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcg 22065879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30257435 - 30257491
Alignment:
Q  280 ggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaa 334  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||||| | ||||||    
T  30257435 ggttattaacgtattgaactcatccctcgatctgagtttttacgcgtcagattgaaa 30257491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 41839796 - 41839740
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||||| |||||| |||||||| |||||||||||  |||||||||||| ||||    
T  41839796 gaaagggtcttgttactgacgtattggactcatccctcgatctgagttcttatgcgt 41839740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 270 - 525
Target Start/End: Original strand, 28002635 - 28002893
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgc-gtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaac 366  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||  ||||||||||| || || ||||||||||   |  || |||| ||    
T  28002635 gaaagggtctggttattaacgtattgaactcatccctcgatctgagttcttacgatgtctgtttgaatctcgttgtgtttggtggcctgactacttcgac 28002734  T
Q  367 tctctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctg 464  Q
    |||||||||||  |  || |||||||||||||||||||||||| ||| ||| |||  ||||| ||||  | |||||| ||||||||| ||| ||||||||    
T  28002735 tctctgatgttttcaagtatgttgagatctgcaggtttcaagttgtcgtgtctgcatacactttggttttttatgctcgaaagagcttttatgcttgctg 28002834  T
Q  465 ctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||| |||||||||  ||||||||| ||||||| |||||||||||| ||| |||||||||    
T  28002835 ctttgttcagggagc--ttggcacttagattttgataccgtgttggcggtcaatccattcg 28002893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 268 - 525
Target Start/End: Original strand, 10623342 - 10623597
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||| |||| | ||||||||     | |||||||||| | |  ||||||  |    
T  10623342 ccgatagggtttggttactaacgtattggactcatccctcgatctgagttctaacgcatttgtttgaa-----ttgtgtttggtggtctaacttctttga 10623436  T
Q  366 ctctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcca-cactctggtactatatgctagaaagagctcttacgcttgct 463  Q
    |||||||||||| || | | |||||||||||||||||||||||| ||| ||| ||||  |||  ||||| |  ||||| ||||||||| | | |||||||    
T  10623437 ctctctgatgtttccagatttgttgagatctgcaggtttcaagttgtcttgtctgcctgcacattggtatttcatgctcgaaagagct-tcatgcttgct 10623535  T
Q  464 gctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||| |||||||| |||||||| ||| ||||||  || ||||||||||||||||||||||    
T  10623536 gctttgttcagggagttgttggcaattgtattttgacactgtgttggcagtcgatccattcg 10623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 268 - 497
Target Start/End: Original strand, 16994470 - 16994703
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    ||||||||||||| ||||||   ||||| |||| |||||   |||||||||||||| || |||||||| ||||| ||||||||||   |  || ||||||    
T  16994470 ccgaaagggtctgattactagtttattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtggcctgactgcttcaa 16994569  T
Q  366 ctctctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgct 463  Q
     |||||||||||  | ||| ||||||||||||||| |||||||||||| ||| |||| ||||||||||| |  |||||  |||||||| ||| ||||| |    
T  16994570 ttctctgatgttttcaggtttgttgagatctgcagatttcaagtcgtcttgtctgcctacactctggtatttgatgctcaaaagagcttttatgcttgtt 16994669  T
Q  464 gctttgctcagggagctgttggcacttggatttt 497  Q
    |||||| ||| |||| |||||||||||| |||||    
T  16994670 gctttgttcatggagttgttggcacttgtatttt 16994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 268 - 525
Target Start/End: Complemental strand, 27900395 - 27900135
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||| |||||||||| ||  ||||||||||   |  || |||| |    
T  27900395 ccgaaagggtctggttactaacatattggactcatccctcgatctgagttcttacacgtatgtttgaaacctgctgtgtttggtggcctgactacttcga 27900296  T
Q  366 ctctctgat-gttccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgct 463  Q
    |||||||||  || |   | ||||||  | |||||||||||||||||| |||  ||| ||||||||||||| | ||||    |||||  ||| |||||||    
T  27900295 ctctctgatattttcaaatttgttgaagtttgcaggtttcaagtcgtcttgtacgcctacactctggtactttgtgctctcgagagcctttatgcttgct 27900196  T
Q  464 gctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||   | |||||||||| ||||||| |||||| ||||||||||| | || ||||||||||    
T  27900195 gcttgatttagggagctgtcggcacttagatttt-ttaccgtgttgtcggttgatccattcg 27900135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 9957294 - 9957351
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    |||||||||| ||| |||||||||||||||||||||||||  ||||||||||||||||    
T  9957294 tcagggagctattgacacttggattttgttaccgtgttggtggtcgatccattcgtca 9957351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 20118223 - 20118166
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  20118223 tcagggagttgttggcacttggattttgttaccgtattggcggtcgatctattcgtca 20118166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 5907100 - 5907152
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||| ||||    
T  5907100 tcagggagctattggcacttggattttgttaccgtgttggtggtcgattcatt 5907152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 10019796 - 10019740
Alignment:
Q  279 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaa 333  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||||||| |||||    
T  10019796 tggttactaacgtattggactcatccctcgatttgagttcttacgcgtctgattgaa 10019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 28302200 - 28302137
Alignment:
Q  279 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtg 340  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||| |||| || |||| ||||    
T  28302200 tggttactaacgtattggactcatccctcgatctgtgttcttacgcatctgattaaaacatgtg 28302137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 270 - 525
Target Start/End: Original strand, 48563248 - 48563507
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaact 367  Q
    |||||||||||||||||||| ||||| ||||||||| |  ||| ||||||||||||| |||||||| || || |||||||||    |  || |||  |||    
T  48563248 gaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgtttggttgcttgactactttgact 48563347  T
Q  368 ctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgc 465  Q
    ||||| |||| || |||||||||||||||||||||||||||||||| ||| |||| ||| ||||||| |  ||||| ||||||||| ||| ||||| ||     
T  48563348 ctctgttgtttccaggtctgttgagatctgcaggtttcaagtcgtcttgtatgcctacagtctggtatttgatgctcgaaagagctattatgcttgttgt 48563447  T
Q  466 tttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| |||||||| |||||||||||| |||||| |||  ||||| |  ||||||||||||    
T  48563448 tttgttcagggagttgttggcacttgaattttgatactatgttgacgatcgatccattcg 48563507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 443 - 525
Target Start/End: Complemental strand, 18628957 - 18628877
Alignment:
Q  443 gaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||||||| ||| ||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18628957 gaaagagcttttatgcttgttg--ttgttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcg 18628877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 607
Target Start/End: Original strand, 15309132 - 15309267
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactattttt-gcattcgttcactattcat 569  Q
    |||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||| || ||| || ||| |||| ||||| |||  |||||||| || ||    
T  15309132 tcagggagttgttggcgcttggattttgt-accgtgttggcggtcgatccattcgccattttaaa-ctctaactgttttttgcaaacgttcactctttat 15309229  T
Q  570 attttttgtaacttggtttcgcgcttgtacacaggttc 607  Q
     |||||||||||||||||||| || ||||  |||||||    
T  15309230 gttttttgtaacttggtttcgtgcctgtaagcaggttc 15309267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 26759458 - 26759511
Alignment:
Q  472 cagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  26759458 cagggagctgttggcacttggattttgttactgtgttggcggtcgatccattcg 26759511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 11871511 - 11871565
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  11871511 tcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcg 11871565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 23777125 - 23777178
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  23777125 tcagggagctgttggcacttggattttg-taccgtgttggcggtcgatccattcg 23777178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 422 - 528
Target Start/End: Complemental strand, 25023404 - 25023298
Alignment:
Q  422 acactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatcca 521  Q
    |||||||||||||  ||| | ||||||||  ||| ||||| ||||||| |||| ||| ||||||||||||||||||| |||| | ||||| |||||| ||    
T  25023404 acactctggtacttcatgttcgaaagagcctttatgcttgttgctttgttcagtgagttgttggcacttggattttgataccatattggcggtcgattca 25023305  T
Q  522 ttcgtca 528  Q
    |||||||    
T  25023304 ttcgtca 25023298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 33323983 - 33324037
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  33323983 tcagggagctgttggcacttggatttcgttactgtgttggcggtcgatccattcg 33324037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 42241477 - 42241525
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatc 519  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42241477 tcagggagttgttggcacttggattttgttaccgtgttggcggtcgatc 42241525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 475 - 525
Target Start/End: Complemental strand, 26925077 - 26925027
Alignment:
Q  475 ggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  26925077 ggagctattggcacttggattttgttactgtgttggcggtcgatccattcg 26925027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 18629023 - 18628967
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    ||||||||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  18629023 gaaagggtctggttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 50959579 - 50959523
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    ||||||||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  50959579 gaaagggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 14393245 - 14393297
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||| |||||||    
T  14393245 tcagggagctgttggcgcttggattttgttcccgtgtttgcagtcaatccatt 14393297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 480
Target Start/End: Original strand, 52148913 - 52149029
Alignment:
Q  366 ctctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgttt-gccacactctggtactatatgctagaaagagctcttacgcttgct 463  Q
    |||||||||||| ||  |||| |||||| |||||||||||||||| || ||| | || ||||||||||| |  ||||| ||||||||| ||  |||||||    
T  52148913 ctctctgatgtttccatgtctattgagacctgcaggtttcaagtcatcttgtctagctacactctggtatttgatgctcgaaagagcttttttgcttgct 52149012  T
Q  464 gctttgctcagggagct 480  Q
    |||||| ||||||||||    
T  52149013 gctttgttcagggagct 52149029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 2688330 - 2688246
Alignment:
Q  438 tgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||||||| ||| ||||||||||| |  ||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||    
T  2688330 tgctagaaagagct-ttatgcttgctgctt-gtgcagggagttgttggcgcttggattt-gttaccgtgttggcggtcaatccattcg 2688246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 8327056 - 8326998
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||||||||||| || ||||||||||||||||||||  |||||||| ||||||||    
T  8327056 ccgaaagggtctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 8326998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 16256560 - 16256613
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||    
T  16256560 tcagggagctgttggcacttg-attttgtcaccgtgttggttgtcgatccattcg 16256613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 30052582 - 30052525
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    ||||||||||| ||||||||| |||||||| ||||||||   ||||||||||||||||    
T  30052582 tcagggagctgctggcacttgaattttgttgccgtgttgatggtcgatccattcgtca 30052525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 26762256 - 26762288
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactc 300  Q
    |||||||||||||||||||||||||||||||||    
T  26762256 ccgaaagggtctggttactaacgtattgaactc 26762288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 33323887 - 33323945
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||||| |||||| | |||||||| |||||||||||  |||||||||||||||||    
T  33323887 ccgaaagggtatggttaatgacgtattggactcatccctcgatctgagttcttacgcgt 33323945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 2688492 - 2688415
Alignment:
Q  279 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgt 354  Q
    ||||||||||||||||| ||||||||| |  |||||||||| |||| || | ||| ||||||| |||||||||| |||    
T  2688492 tggttactaacgtattggactcatcccacgatctgagttctaacgcatcagattgtaacttgttgtgtttggtggtgt 2688415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 524
Target Start/End: Original strand, 16219283 - 16219362
Alignment:
Q  438 tgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||| ||||||||||||| |||||| |||| | |||||||||||||||||||||||     |||||||||| || ||||||||||||    
T  16219283 tgctcgaaagagctcttatgcttgc-gctt-gttcagggagctgttggcacttgga-----ttaccgtgtttgcggtcgatccattc 16219362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 19757843 - 19757896
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||||||||||||| || ||||||||||||||||  ||| |||||||||    
T  19757843 tcagggagctgttggcactt-gagtttgttaccgtgttggtggtcaatccattcg 19757896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 26925174 - 26925118
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||| |||||||| | |||||| |||||||||||  |||||||||||||||||    
T  26925174 gaaagggtatggttactgatgtattggactcatccctcgatctgagttcttacgcgt 26925118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 523
Target Start/End: Complemental strand, 14167822 - 14167771
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    |||||||| |||||||||||||| |||| ||||||||| || |||||||||||    
T  14167822 tcagggagttgttggcacttgga-tttgataccgtgttagcggtcgatccatt 14167771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 15394632 - 15394687
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacg 321  Q
    |||||||| |||||||||||| |||||| || ||||||||  ||||||||||||||    
T  15394632 ccgaaaggatctggttactaatgtattggacgcatccctcgatctgagttcttacg 15394687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 16256465 - 16256520
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacg 321  Q
    ||||||||||||| || || |||||||| |||||||||||  ||||||||||||||    
T  16256465 ccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacg 16256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 272 - 593
Target Start/End: Original strand, 41566177 - 41566503
Alignment:
Q  272 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaactct 369  Q
    |||||||||||||||||||||||  ||||||||| |  ||||||||||||||||| ||||||||     | |||||||||    |  || |||  |||||    
T  41566177 aagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaattccattgtgtttggttgcttgactgctttgactct 41566276  T
Q  370 ctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctt 467  Q
    ||||||||  | ||||||||||| |||||||||||||||||||| ||| | || ||||||||||| |  ||||| ||||||||| ||| ||||| ||  |    
T  41566277 ctgatgttttcaggtctgttgaggtctgcaggtttcaagtcgtcttgtattcctacactctggtatttaatgctcgaaagagctgttatgcttgttgtct 41566376  T
Q  468 tgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatt-tttgcattcgttcactatt 566  Q
    ||  ||||||||||||| ||||| ||||||| |||||||||||| ||||||||||| |||  ||| || ||| |||| || || |||   ||| |||  |    
T  41566377 tgtgcagggagctgttgccacttagattttgataccgtgttggcggtcgatccatttgtcgtttttaaactctaactgttattggcaaaagttaacttct 41566476  T
Q  567 catattttttgtaacttggtttcgcgc 593  Q
    |||||||||||||||||||||||||||    
T  41566477 catattttttgtaacttggtttcgcgc 41566503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 268 - 525
Target Start/End: Complemental strand, 1029793 - 1029533
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttgg-tgatgttgcttcttca 364  Q
    ||||||||||||| |||||||||||||| ||||||||| |  ||||||||||||||||| |||||||| |  || |||||||| || | |  || ||||     
T  1029793 ccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgtttggctgct-tgactgcttcg 1029696  T
Q  365 actctctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgc 462  Q
    |||||||||||||  |  ||||||||||| ||||| ||||||||||||  ||| || | ||||||||||| |  ||||| ||||||||| ||| |||| |    
T  1029695 actctctgatgttttcatgtctgttgagacctgcatgtttcaagtcgttttgtatgtctacactctggtatttgatgctcgaaagagctattatgcttac 1029596  T
Q  463 tgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    || ||||  ||||||| |||||||||||| |||||| |||| ||||||| |||||||||||||    
T  1029595 tgttttgtgcagggagttgttggcacttgaattttgataccatgttggcggtcgatccattcg 1029533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 599
Target Start/End: Original strand, 18003727 - 18003856
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatt-tttgcattcgttcactattcat 569  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||     || ||| || | || | ||||  |||||||| |||||    
T  18003727 tcagggagctgttggcacttggattttgttaccgtgttggcggtcgattcatttgtcatacctaaactctaattgttctatgcagacgttcacttttcat 18003826  T
Q  570 attttttgtaacttggtttcgcgcttgtac 599  Q
    |||||||||||||||||||||||| |||||    
T  18003827 attttttgtaacttggtttcgcgcatgtac 18003856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 11954654 - 11954587
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccct--ctctgagttcttacgcgtctgtttgaa 333  Q
    ||||||||||||||||| |||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  11954654 ccgaaagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaa 11954587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 10659158 - 10659105
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  10659158 tcagggagttgttggcacttggattttgttaccgtgttggtggtcgatccattc 10659105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 14442574 - 14442516
Alignment:
Q  471 tcagggagctgttgg-cacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  14442574 tcagggagccgttgggcacttggattttgttaccgtgttggcggtcaatccattcgtca 14442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 14575342 - 14575292
Alignment:
Q  478 gctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  14575342 gctgttggcacttggatgttgttgccgtgttggcggtcgatccattcgtca 14575292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 480
Target Start/End: Complemental strand, 11954542 - 11954446
Alignment:
Q  385 tgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactat-atgctagaaagagctcttacgcttgctgctttgctcagggagct 480  Q
    |||||| |||||||||||||||||| || ||| |||| ||||| ||||| ||| ||||| ||||||||| ||| ||||||||||||| ||||||||||    
T  11954542 tgttgaaatctgcaggtttcaagtcttcgtgtctgcctacactttggta-tatgatgctcgaaagagcttttatgcttgctgctttgttcagggagct 11954446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 598
Target Start/End: Complemental strand, 13399849 - 13399692
Alignment:
Q  442 agaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcga 541  Q
    |||||||||| ||  ||||||||||||| |||| |||| |||| |||||||||| || | | |||||||| ||| ||||||||| ||  || || | | |    
T  13399849 agaaagagctttttagcttgctgctttgttcagagagcggttgacacttggattctgattcagtgttggcggtcaatccattcgccatattaaaacccta 13399750  T
Q  542 actatt-tttgcattcgttcactattcatattttttgtaacttggtttcgcgcttgta 598  Q
    ||| || ||||||  |||||| |  ||||||||||||||||||| |||||||| ||||    
T  13399749 acttttctttgcagacgttcattcatcatattttttgtaacttgatttcgcgcctgta 13399692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 588609 - 588695
Alignment:
Q  436 tatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    |||||| ||||||||| ||| |||||||| | || ||| ||||||||||| ||||||||||| |||||  |||||| ||| |||||||    
T  588609 tatgctcgaaagagcttttatgcttgctggtgtgttcaaggagctgttgg-acttggattttattaccacgttggcggtcaatccatt 588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 625313 - 625227
Alignment:
Q  436 tatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccatt 523  Q
    |||||| ||||||||| ||| |||||||| | || ||| ||||||||||| ||||||||||| |||||  |||||| ||| |||||||    
T  625313 tatgctcgaaagagcttttatgcttgctggtgtgttcaaggagctgttgg-acttggattttattaccacgttggcggtcaatccatt 625227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 8869866 - 8869817
Alignment:
Q  475 ggagctgttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||||||||| ||||||||||||| |||  ||||| ||||||||||||||    
T  8869866 ggagctgttgacacttggattttgatactatgttgacagtcgatccattc 8869817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 10659251 - 10659195
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    ||||| |||||||| || |||||||| |||||||||||  |||||||||||||||||    
T  10659251 gaaagagtctggttgctgacgtattggactcatccctcgatctgagttcttacgcgt 10659195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 5950190 - 5950154
Alignment:
Q  271 aaagggtctggttactaacgtattgaactcatccctc 307  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  5950190 aaagggtttggttactgacgtattgaactcatccctc 5950154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 268 - 511
Target Start/End: Original strand, 39228890 - 39229136
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    |||||||| ||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||  | |||||||||| | |  ||||||| |    
T  39228890 ccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaaactgcttgtgtttggtggtttgacttcttcga 39228989  T
Q  366 ctctctgatg-ttccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgct 463  Q
     ||||||||| || | | ||||||||||| ||||| |||||||||||| ||| |||| |||  | ||||||  ||||| ||||||| | ||| |||||||    
T  39228990 atctctgatgttttcagatctgttgagatttgcagttttcaagtcgtcttgtctgcctacatgccggtacttcatgctcgaaagag-ttttatgcttgct 39229088  T
Q  464 gctttgctcagggagctgttggcacttggattttgttaccgtgttggc 511  Q
    |||||| |||| ||| ||||||| || |||| ||| ||  ||||||||    
T  39229089 gctttgttcagagagttgttggccctcggatcttgatattgtgttggc 39229136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 267 - 525
Target Start/End: Complemental strand, 12419596 - 12419334
Alignment:
Q  267 tccgaaagggtctggttactaacgtattgaactcatccct--ctctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttca 364  Q
    ||||||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||| |||||||||| | | ||||||||||   |  ||  ||      
T  12419596 tccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactgttttt 12419497  T
Q  365 actctctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgc 462  Q
    ||||||| || ||| | | | |||||||||||| ||||||||||||||| |||  ||| ||||| | | |||   |||| ||||||||| ||| ||||||    
T  12419496 actctctaattttctcagatttgttgagatctgtaggtttcaagtcgtcttgtacgcctacactttagaacttagtgctcgaaagagcttttatgcttgc 12419397  T
Q  463 tgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||   ||||||||||| ||||||||||||||| |||  | |||| ||||| |||||||||    
T  12419396 tgcttgattcagggagctgatggcacttggattttattattgcgttgacagtcaatccattcg 12419334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 267 - 525
Target Start/End: Complemental strand, 12431656 - 12431394
Alignment:
Q  267 tccgaaagggtctggttactaacgtattgaactcatccct--ctctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttca 364  Q
    ||||||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||| |||||||||| | | ||||||||||   |  ||  ||      
T  12431656 tccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactgttttt 12431557  T
Q  365 actctctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgc 462  Q
    ||||||| || ||| | | | |||||||||||| ||||||||||||||| |||  ||| ||||| | | |||   |||| ||||||||| ||| ||||||    
T  12431556 actctctaattttctcagatttgttgagatctgtaggtttcaagtcgtcttgtacgcctacactttagaacttagtgctcgaaagagcttttatgcttgc 12431457  T
Q  463 tgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||   ||||||||||| ||||||||||||||| |||  | |||| ||||| |||||||||    
T  12431456 tgcttgattcagggagctgatggcacttggattttattattgcgttgacagtcaatccattcg 12431394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 428 - 525
Target Start/End: Complemental strand, 39711592 - 39711496
Alignment:
Q  428 tggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||  ||||| ||||||| | ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  39711592 tggtacttcatgcttgaaagagtt-ttatgcttgctgctttgttcagagagctgttggcacttggattttgttaccgtgttggcggtctatccattcg 39711496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 268 - 590
Target Start/End: Original strand, 5136179 - 5136498
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    |||||||||| ||| || |||||||||| |||||||||||  |||||||||||||||||||||| |||||  || || ||||||| | |  |  |||  |    
T  5136179 ccgaaagggtttggctattaacgtattggactcatccctcgatctgagttcttacgcgtctgttggaaacc-gttgtatttggtggtctatc--ctttga 5136275  T
Q  366 ctctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgct 463  Q
     ||||||||||| || || |||||||| |||||||||||||||   | |||  |||| | ||| |||||||   |||| ||||||||| | |||||||||    
T  5136276 ttctctgatgtttccaggactgttgagttctgcaggtttcaaggaattatggctgcctatactttggtact---tgctcgaaagagctttcacgcttgct 5136372  T
Q  464 gctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatttttgcattcgttcact 563  Q
    |||| | ||||||||||||||||||||||| || ||||||||| | || ||||||||||||| || ||| ||   | |||| ||||||||   |||||||    
T  5136373 gctt-gttcagggagctgttggcacttgga-ttcgttaccgtgctagcggtcgatccattcgccatttttaaatcctaactgtttttgcagaagttcact 5136470  T
Q  564 attcatatt-ttttgtaacttggtttcg 590  Q
     ||||| || ||||||| ||||||||||    
T  5136471 tttcatgttcttttgtagcttggtttcg 5136498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 269 - 525
Target Start/End: Complemental strand, 14695164 - 14694904
Alignment:
Q  269 cgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaac 366  Q
    ||||||||||| ||||||||||||||| ||| ||| |||  ||| |||||||||| || ||| |||||| |||  |||||||||   |  ||||||||||    
T  14695164 cgaaagggtctagttactaacgtattggacttatcactcgatctaagttcttacgagtatgtatgaaacatgttctgtttggtggcctgacttcttcaac 14695065  T
Q  367 tctctgatgtt-ccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctg 464  Q
    |   |||| || ||  || |||||| || || || |||||||  ||| ||| | || ||||||||||| |  ||||| ||||||||| ||| ||||| ||    
T  14695064 ttagtgatatttccatgtatgttgatatatgtagatttcaaggtgtcttgtctacctacactctggtaattcatgctcgaaagagcttttatgcttgttg 14694965  T
Q  465 ctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||| ||| ||||||| ||||||||| |||||| |||| |||| || |||||||||||||    
T  14694964 ctttgttcatggagctgatggcacttgaattttgataccatgtttgcggtcgatccattcg 14694904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 18481999 - 18481914
Alignment:
Q  438 tgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| ||||||||| ||||||||||||||| | | |||||| ||||||||||||||||  |||||||||||||| |||||||||||||    
T  18481999 tgctcgaaagagcttttacgcttgctgctt-gtttagggagttgttggcacttggattc-gttaccgtgttggcggtcgatccattcg 18481914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 527
Target Start/End: Original strand, 4724454 - 4724597
Alignment:
Q  385 tgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagctgtt 483  Q
    |||||||||| ||| ||||||||| ||| ||||| || ||||| || ||||  ||||| ||||||||| ||| ||||||||||||| ||| |||  ||||    
T  4724454 tgttgagatcggcaagtttcaagttgtcttgtttacctacactatgatacttaatgctcgaaagagcttttatgcttgctgctttgatcatggaattgtt 4724553  T
Q  484 ggcacttggattttgttaccgtgttggcagtcgatccattcgtc 527  Q
    | |||||| | |||||||| | ||| || ||| |||||||||||    
T  4724554 gacacttgaactttgttactgagttagcggtcaatccattcgtc 4724597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 9848195 - 9848252
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtca 528  Q
    |||||||| ||||||||||||||| ||||| ||||||||||  |||||||||||||||    
T  9848195 tcagggagttgttggcacttggatgttgttgccgtgttggcgatcgatccattcgtca 9848252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 4730702 - 4730775
Alignment:
Q  279 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 350  Q
    ||||||||||||||||| ||||||||| |  |||||||||| ||||||| | ||| ||||||| ||||||||||    
T  4730702 tggttactaacgtattggactcatcccacgatctgagttctaacgcgtcagattgtaacttgttgtgtttggtg 4730775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 9848108 - 9848159
Alignment:
Q  275 ggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  9848108 ggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 593
Target Start/End: Original strand, 38002108 - 38002232
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatt-tttgcattcgttcactattcat 569  Q
    ||||||||| ||||||||| | ||||||||| |||| |||| ||||||||||||| || ||| || ||| ||  ||| | || |   ||||||| |||||    
T  38002108 tcagggagccgttggcactagaattttgttatcgtgctggcggtcgatccattcgccatttttaaactctaatgattctatgtagatgttcacttttcat 38002207  T
Q  570 a-ttttttgtaacttggtttcgcgc 593  Q
    | |||||||||||||||||||||||    
T  38002208 atttttttgtaacttggtttcgcgc 38002232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 36254668 - 36254723
Alignment:
Q  471 tcagggagctgttgg-cacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||||||||| ||||| |||||| ||||||||||||||||||| ||| |||||||||    
T  36254668 tcagggagccgttgggcacttgaattttgttaccgtgttggcggtcaatccattcg 36254723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 35114538 - 35114486
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||||||||||||| ||||||||||||| || | ||||||| ||||||||||||    
T  35114538 tcagggagctgttgacacttggattttg-tatcttgttggcggtcgatccattc 35114486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 524
Target Start/End: Complemental strand, 19932472 - 19932329
Alignment:
Q  383 tctgttgagatctgcaggtttcaagtcgtcatgtttgc---cacactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagc 479  Q
    ||||||||||| |||||||||||||| ||| ||| |||   ||||||| ||| ||  ||||| ||||||||| ||| ||||||||| ||| |||||||||    
T  19932472 tctgttgagatttgcaggtttcaagttgtcttgtctgcagacacactcgggtccttcatgctcgaaagagcttttatgcttgctgcattgttcagggagc 19932373  T
Q  480 tgttggcacttggattttgttaccgtgttggcagtcgatccattc 524  Q
    |||||||||||||| |||  |||||||||||| ||||||||||||    
T  19932372 tgttggcacttgga-tttcataccgtgttggcggtcgatccattc 19932329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 525
Target Start/End: Complemental strand, 43168808 - 43168550
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaa---cttgtggtgtttggtgatgttgcttctt 362  Q
    ||||||| |||||||| ||||||||||  |||||||||||  | |||||||||||| |||||||||| |   |||||| || | | |    |  ||||||    
T  43168808 ccgaaagagtctggttgctaacgtattagactcatccctcaatttgagttcttacgtgtctgtttgacatcgcttgtgctgctagct----tgacttctt 43168713  T
Q  363 caactctctgatg-ttccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgc-cacactctggtactatatgctagaaagagctcttacgctt 460  Q
    | ||||||||||| || | | |||||||||||||||||||||||||||||  |||||||  |||| | | |||| | |||| ||||||||| ||| ||||    
T  43168712 cgactctctgatgtttgcagatctgttgagatctgcaggtttcaagtcgttttgtttgcttacacgcagatactttgtgctcgaaagagct-ttatgctt 43168614  T
Q  461 gctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    ||| | ||| |||||||| ||||| || ||| |||||| |||||||||| |||| ||||||||||    
T  43168613 gcttc-ttgttcagggagttgttgacatttgaattttgataccgtgttgacagttgatccattcg 43168550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 2770941 - 2770819
Alignment:
Q  472 cagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatt-tttgcattcgttcactattcata 570  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| |||  ||| || ||| |||| || || |||   ||| |||  |||||    
T  2770941 cagggagctgttgacacttggattttgataccgtgttggcggtcaatccatttgtcgtttttaaactctaactgttattggcaaatgttaacttctcata 2770842  T
Q  571 ttttttgtaacttggtttcgcgc 593  Q
    |||||||||||||||||||||||    
T  2770841 ttttttgtaacttggtttcgcgc 2770819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 525
Target Start/End: Complemental strand, 12466312 - 12466262
Alignment:
Q  475 ggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||||||||    
T  12466312 ggagctgtcggcacttggattttgttactgtgttggaggtcgatccattcg 12466262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 34793346 - 34793296
Alignment:
Q  471 tcagggagctgttggcacttggattttgttaccgtgttggcagtcgatcca 521  Q
    ||||||||||||||||||||| |||| || ||||||||||| |||||||||    
T  34793346 tcagggagctgttggcacttgaatttcgtcaccgtgttggcggtcgatcca 34793296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 18274017 - 18274088
Alignment:
Q  267 tccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaact 336  Q
    |||||||||||||||||||||||  |||| ||||||| |||  || ||||| |||||||| |||||||||||    
T  18274017 tccgaaagggtctggttactaacacattggactcatcactcgatcagagtttttacgcgtatgtttgaaact 18274088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Complemental strand, 17589834 - 17589795
Alignment:
Q  367 tctctgatgttccgggtctgttgagatctgcaggtttcaa 406  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  17589834 tctctgatgttccaggtctgttgagatctgcaggtctcaa 17589795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 24099433 - 24099490
Alignment:
Q  279 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaa 334  Q
    |||||| ||||||||||||||||||||||  |||||||| ||||||||| | ||||||    
T  24099433 tggttattaacgtattgaactcatccctcgatctgagtttttacgcgtcggattgaaa 24099490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 12566904 - 12566960
Alignment:
Q  270 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    ||||||| |||||| || ||||||||||||||||||||  |||||||| ||||||||    
T  12566904 gaaagggcctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 12566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 3925424 - 3925468
Alignment:
Q  365 actctctgatgttccgggtctgttgagatctgcaggtttcaagtc 409  Q
    |||||||||||  || ||||||||||||||||||||| |||||||    
T  3925424 actctctgatgcaccaggtctgttgagatctgcaggtctcaagtc 3925468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 35078002 - 35077966
Alignment:
Q  571 ttttttgtaacttggtttcgcgcttgtacacaggttc 607  Q
    |||||||||||||||||||||||| |||||| |||||    
T  35078002 ttttttgtaacttggtttcgcgctcgtacacgggttc 35077966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 527
Target Start/End: Original strand, 31946272 - 31946436
Alignment:
Q  365 actctctgatgttc-cgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgc 462  Q
    |||||||||||||  | |||| |||||| | |||||||||||||||||| ||| | || ||||||||||| |  ||||| ||||||||| ||| |||||     
T  31946272 actctctgatgttttcaggtccgttgaggtttgcaggtttcaagtcgtcttgtattcctacactctggtatttgatgctcgaaagagctgttatgcttgt 31946371  T
Q  463 tgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcgtc 527  Q
    ||  |||  ||||||||||||||||||||||||||| |||||||||||| | | |||||||||||    
T  31946372 tgtcttgtgcagggagctgttggcacttggattttgataccgtgttggcgggcaatccattcgtc 31946436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 6257236 - 6257357
Alignment:
Q  284 actaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaactctctgatgttccgg 381  Q
    |||||| ||||| |||||||||||  ||||||||||||||||| |||||||||| ||| |||||||||| | |   || ||||| |||||||| |||| |    
T  6257236 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtggtatgattttttcaattctctgatattccag 6257334  T
Q  382 gtctgttgagatctgcaggtttc 404  Q
     | ||||||||||||||||||||    
T  6257335 atttgttgagatctgcaggtttc 6257357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 511
Target Start/End: Complemental strand, 3008899 - 3008661
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaa 365  Q
    |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||| ||| |||||||      | ||||||||||   |   |||||| |    
T  3008899 ccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgtttga------ttgtgtttggtggcctgatttcttcga 3008806  T
Q  366 ctctctgatg-ttccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgct 463  Q
    |||| ||||| |||| | | |||||||||||| ||||||||||||||  ||| ||||  |||  |||||||  ||||| ||||||||| ||| |||||||    
T  3008805 ctctatgatgtttccagatttgttgagatctgtaggtttcaagtcgtattgtctgccttcacattggtacttcatgcttgaaagagct-ttatgcttgct 3008707  T
Q  464 gctttgctcagggagctgttggcacttggattttgttaccgtgttggc 511  Q
    || ||| |||||||| ||||||||| ||||||||| ||  ||||||||    
T  3008706 gc-ttgttcagggagttgttggcac-tggattttgatagtgtgttggc 3008661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 522
Target Start/End: Complemental strand, 32718182 - 32718098
Alignment:
Q  437 atgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccat 522  Q
    ||||| ||||||||||||| | ||||||||| | ||||| |||||||||||| | |||| ||||||||||||||| ||||||||||    
T  32718182 atgctcgaaagagctcttatgtttgctgctt-gttcaggaagctgttggcacgtagattatgttaccgtgttggcggtcgatccat 32718098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 525
Target Start/End: Original strand, 6189647 - 6189900
Alignment:
Q  272 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaactct 369  Q
    ||||| ||||||||||| |||||| |||||||||||  ||| | |||||| || |||||||||||||| | |||||||| ||  |  ||||||| ||||     
T  6189647 aagggcctggttactaatgtattggactcatccctcgatctaaattcttaggcatctgtttgaaactttttgtgtttggagacttgacttcttcgactca 6189746  T
Q  370 ctgatgt-tccgggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctt 467  Q
     |||||| ||| | | ||||||||| ||| ||||||||| ||| ||||   || ||||| |||||||  |||||  || ||||| ||| ||||||||       
T  6189747 ttgatgtgtccagatttgttgagatttgctggtttcaaggcgtgatgtcaacctacactatggtacttcatgctcaaaggagct-ttatgcttgctg--- 6189842  T
Q  468 tgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
     | |||||||| |||||| ||||| |||||| | |||||||||| |||||||||||||    
T  6189843 ggttcagggagttgttggtacttgaattttgattccgtgttggcggtcgatccattcg 6189900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 529
Target Start/End: Original strand, 9535068 - 9535282
Alignment:
Q  315 tcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaactctctgatgttccgggtctgttgagatctgcaggtttcaagtcgtcat 414  Q
    ||||||||||||  || |||||||| |||||||||| | |   |||||||| ||| || |||||| | | ||||||| ||||||| || |||| | ||||    
T  9535068 tcttacgcgtcttgtt-aaacttgttgtgtttggtggtttgaattcttcaattctttgttgttccagatttgttgagctctgcagattccaaggcttcat 9535166  T
Q  415 gtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcag 513  Q
    |  |||| |||||||||||||  || || |||||| || |||  |||||||||||| | ||||||||||||| |   | ||||||  ||| |||||||||    
T  9535167 gcctgcccacactctggtacttcatactcgaaagatcttttatacttgctgctttgtttagggagctgttggaatgcgaattttgaaaccatgttggcag 9535266  T
Q  514 tcgatccattcgtcag 529  Q
    ||||| ||||||||||    
T  9535267 tcgattcattcgtcag 9535282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 31304021 - 31304075
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttac 320  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  31304021 ccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 387 - 599
Target Start/End: Original strand, 29333791 - 29334004
Alignment:
Q  387 ttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagctgttgg 485  Q
    ||||||| || ||||||||||| ||  |||||||  |||||| |||||| ||| || ||||||||| ||| |||| |||||||  |  ||||||| ||      
T  29333791 ttgagatatgtaggtttcaagttgtggtgtttgcttacactccggtactttatacttgaaagagcttttatgctttctgctttattttgggagctattaa 29333890  T
Q  486 cacttggattttgttaccgtgttggcagtcgatccattcgtcagtttgaagctcgaactatt-tttgcattcgttcactattcatattttttgtaacttg 584  Q
    |||||| | |||| || ||  ||||| |||||||||||||||||||| || ||  ||||||| || |||   ||||||| ||||||||||||||||||||    
T  29333891 cacttgaaatttgatatcgcattggcggtcgatccattcgtcagttttaaact-taactattcttcgcagatgttcactcttcatattttttgtaacttg 29333989  T
Q  585 gtttcgcgcttgtac 599  Q
     ||||| || |||||    
T  29333990 atttcgtgcatgtac 29334004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 522
Target Start/End: Complemental strand, 28554073 - 28553995
Alignment:
Q  443 gaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccat 522  Q
    ||||||||||||| ||||| ||||||  |||||||  ||||||||  |||||||||||||||||||| ||||||| ||||    
T  28554073 gaaagagctcttatgcttgttgctttt-tcagggaattgttggcaaatggattttgttaccgtgttgacagtcgaaccat 28553995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 29032697 - 29032744
Alignment:
Q  275 ggtctggttactaacgtattgaactcatccctc--tctgagttcttac 320  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||    
T  29032697 ggtctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 30625626 - 30625582
Alignment:
Q  481 gttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||    
T  30625626 gttgacacttgaattttgttaccgtgttggcggtcgatccattcg 30625582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 6257414 - 6257457
Alignment:
Q  467 ttgctcagggagctgttggcacttggattttgttaccgtgttgg 510  Q
    ||| |||||||||||||| ||||||||||||| |||||||||||    
T  6257414 ttgatcagggagctgttgacacttggattttgataccgtgttgg 6257457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 8210006 - 8210060
Alignment:
Q  272 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||| ||||||||||||| ||||| |||||||||||  |||||||||||||||||    
T  8210006 aaggttctggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 381 - 522
Target Start/End: Complemental strand, 35740125 - 35739985
Alignment:
Q  381 ggtctgttgagatctgcaggtttcaagtcgtcatgtttgcc-acactctggtactatatgctagaaagagctcttacgcttgctgctttgctcagggagc 479  Q
    ||||||||||||| ||||||||||||||||||  || |||| ||||| ||||| |  ||||| ||||||||| ||| ||||| ||||||| |||||||||    
T  35740125 ggtctgttgagatttgcaggtttcaagtcgtcgcgtctgcctacactttggtatttgatgctcgaaagagcttttatgcttgttgctttgttcagggagc 35740026  T
Q  480 tgttggcacttggattttgttaccgtgttggcagtcgatccat 522  Q
      ||||||||||||||||| ||  |||||||| ||| ||||||    
T  35740025 --ttggcacttggattttgataatgtgttggcggtcaatccat 35739985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 525
Target Start/End: Original strand, 24405199 - 24405284
Alignment:
Q  438 tgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| ||||||||| | |||||||| |||| | ||||||||||||||||||||||| |||||||||||| |||  |||||||||||||    
T  24405199 tgctcgaaagagctttcacgcttgccgctt-gttcagggagctgttggcacttgga-tttgttaccgtgctggaggtcgatccattcg 24405284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 44558561 - 44558474
Alignment:
Q  438 tgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| ||||||||| ||| |||||||||| || ||| ||||||| |||||||||||||||| ||| |||||| | || ||||||||||    
T  44558561 tgctcgaaagagcttttatgcttgctgctgtgttcacggagctgctggcacttggattttgatactgtgttgccggttgatccattcg 44558474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 557465 - 557508
Alignment:
Q  366 ctctctgatgttccgggtctgttgagatctgcaggtttcaagtc 409  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  557465 ctctctgatgttccaggtctgttgagatctgcaggcttcaagtc 557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 47005806 - 47005748
Alignment:
Q  467 ttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||||||||||||||||||||||||||  | ||||| |||| | |||||||||||||    
T  47005806 ttgctcagggagctgttggcacttggattcggataccgcgttgacggtcgatccattcg 47005748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 521
Target Start/End: Complemental strand, 9192411 - 9192326
Alignment:
Q  436 tatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatcca 521  Q
    |||||| ||||||||| |||  |||| || |||| ||| || |||| ||| || ||||||||| ||||||||||||||||||||||    
T  9192411 tatgctcgaaagagctattattcttgttgttttgttcatggggctgctggtacgtggattttgataccgtgttggcagtcgatcca 9192326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 47005894 - 47005839
Alignment:
Q  271 aaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||||||||||| |||||||| |||||||||||  ||| |||||||||||||    
T  47005894 aaagggtctggttactgacgtattggactcatccctcgatcttagttcttacgcgt 47005839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 8819575 - 8819533
Alignment:
Q  367 tctctgatgttccgggtctgttgagatctgcaggtttcaagtc 409  Q
    ||||||||||||| |||||||||||||||| |||| |||||||    
T  8819575 tctctgatgttccaggtctgttgagatctgtaggtctcaagtc 8819533  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 24405031 - 24405100
Alignment:
Q  268 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaac 335  Q
    |||||||||| |||||| |||||||||| ||||||| |||  ||  |||||||||||||||||| |||||    
T  24405031 ccgaaagggtttggttattaacgtattggactcatctctcgatcatagttcttacgcgtctgttggaaac 24405100  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 17768142 - 17768059
Alignment:
Q  271 aaagggtctggttacta-acgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgat 352  Q
    ||||||||||||||||| || ||||||||| |||||||  |||||||||||| |||||| |||| || | || ||||||||||||    
T  17768142 aaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgtct-tttggaaatcgttgtgtttggtgat 17768059  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 19069443 - 19069360
Alignment:
Q  271 aaagggtctggttacta-acgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgat 352  Q
    ||||||||||||||||| || ||||||||| |||||||  |||||||||||| |||||| |||| || | || ||||||||||||    
T  19069443 aaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgtct-tttggaaatcgttgtgtttggtgat 19069360  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 9192522 - 9192482
Alignment:
Q  367 tctctgatgttccgggtctgttgagatctgcaggtttcaag 407  Q
    ||||||||||||| ||||||||||||| ||||||| |||||    
T  9192522 tctctgatgttccaggtctgttgagatttgcaggtctcaag 9192482  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 28180566 - 28180538
Alignment:
Q  279 tggttactaacgtattgaactcatccctc 307  Q
    |||||||||||||||||||||||||||||    
T  28180566 tggttactaacgtattgaactcatccctc 28180538  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 353293 - 353236
Alignment:
Q  269 cgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 324  Q
    |||||||||||||||||| || ||||| |||||||||||  |||||||||||||||||    
T  353293 cgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

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Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 525
Target Start/End: Complemental strand, 353234 - 353145
Alignment:
Q  436 tatgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||||| |||||||||  || |||||||| | |  |||| |||| ||||||||||||||||||||||| |||| || ||| |||||||||    
T  353234 tatgctcgaaagagcttgtatgcttgctggtgtattcagagagcggttggcacttggattttgttaccatgttagcggtcaatccattcg 353145  T

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Target: scaffold0003; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 594
Target Start/End: Complemental strand, 353111 - 353075
Alignment:
Q  558 ttcactattcatattttttgtaacttggtttcgcgct 594  Q
    |||||| ||||||||||||||||||||||||||||||    
T  353111 ttcacttttcatattttttgtaacttggtttcgcgct 353075  T

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Target: scaffold0174 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 525
Target Start/End: Original strand, 30744 - 30828
Alignment:
Q  438 tgctagaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccattcg 525  Q
    |||| ||||||||| ||| ||||||||||| |  ||||||| |||||||||||||| ||||||||||||||| | ||| |||||||||    
T  30744 tgctcgaaagagct-ttatgcttgctgctt-gtgcagggagttgttggcacttgga-tttgttaccgtgttgacggtcaatccattcg 30828  T

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Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 30582 - 30654
Alignment:
Q  279 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggt 349  Q
    ||||||||||||||||| ||||||||| |  | |||||||| ||||||| | ||| ||||||| |||||||||    
T  30582 tggttactaacgtattggactcatcccacgatatgagttctaacgcgtcagattgtaacttgttgtgtttggt 30654  T

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