View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12148_low_4 (Length: 404)
Name: NF12148_low_4
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12148_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 32346886 - 32347260
Alignment:
| Q |
18 |
ggtatgatatgttgatccttaaatcaaaaatttgaatttattactctcgacaaaaatacatatgtacgtgtaggtgtttgtagagtatcttatgacactc |
117 |
Q |
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| T |
32346886 |
ggtatgatatgttgatccttaaatcaaaaatttgaatttattactctcgacaaaaatacatatgtacatgtaaatgtttgtagagtatcttatgacactc |
32346985 |
T |
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| Q |
118 |
ggtttatgatacatatgcacatatgaaaaagagaaaaatgggttgtgaatataaatatgtagaatctattcacaatcataagagattatgaaacaaattt |
217 |
Q |
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| T |
32346986 |
ggtttatgatacatatgcacatatgaaaaagagaaaaattggttgtgaatataaatatgtagaatctattcgcaatcataagagattatgaaacaaattt |
32347085 |
T |
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| Q |
218 |
taagcaaaggatatcttatgacattagttttattnnnnnnnnnnnnnnnnnnnggttgtccatgcaagataaatgaaagaaaaatccatagacatgaatc |
317 |
Q |
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| T |
32347086 |
taagcaaaggatatcttatgacattagttttattaaaaaaaaaatcaaaaaaggtttgtccatacaagataaatcaaagaaaaatccataaacatgaatc |
32347185 |
T |
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| Q |
318 |
cataaattcattgtatattctctcttatgagagtcattagatcatgttgtacacaaatcaggttgtcatagcaca |
392 |
Q |
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| T |
32347186 |
cagaaattgattgtatattctctcttatgagagtcattagattatgttgtacacaaatcaagttgtcatagcaca |
32347260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 32361466 - 32361554
Alignment:
| Q |
163 |
tgaatataaatatgtagaatctattcacaatcataagagattatgaaacaaattttaagcaaaggatatcttatgacattagttttatt |
251 |
Q |
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| T |
32361466 |
tgaatacaaatcagtagaatctattcacactcataagagattaggaaaccaattttaagcaaaggatttcttatgccattaattttatt |
32361554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 32361562 - 32361629
Alignment:
| Q |
271 |
ggttgtccatgcaagataaatgaaagaaaaatccatagacatgaatccataaattcattgtatattct |
338 |
Q |
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|||||||||| |||||||||| |||||||||||| | ||||||||| | |||| |||||||||||| |
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| T |
32361562 |
ggttgtccatacaagataaatcaaagaaaaatccctcaacatgaatctaggaattgattgtatattct |
32361629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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