View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12148_low_6 (Length: 384)

Name: NF12148_low_6
Description: NF12148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12148_low_6
NF12148_low_6
[»] chr2 (17 HSPs)
chr2 (207-370)||(18058588-18058753)
chr2 (38-198)||(6177954-6178114)
chr2 (38-134)||(18947382-18947478)
chr2 (36-198)||(18059070-18059232)
chr2 (36-196)||(39788320-39788480)
chr2 (36-196)||(41644050-41644211)
chr2 (36-142)||(27138785-27138891)
chr2 (41-139)||(17244837-17244935)
chr2 (36-198)||(41713340-41713501)
chr2 (44-148)||(19093640-19093744)
chr2 (36-177)||(15651026-15651167)
chr2 (63-139)||(38249905-38249979)
chr2 (36-145)||(42005565-42005673)
chr2 (37-198)||(18779115-18779268)
chr2 (36-94)||(34441736-34441793)
chr2 (41-94)||(18514544-18514597)
chr2 (67-198)||(34441588-34441718)
[»] chr7 (11 HSPs)
chr7 (35-198)||(22955021-22955183)
chr7 (41-139)||(10675026-10675124)
chr7 (36-134)||(40382067-40382165)
chr7 (36-197)||(4618464-4618625)
chr7 (36-139)||(49002402-49002505)
chr7 (36-198)||(37854003-37854166)
chr7 (36-134)||(4902498-4902596)
chr7 (38-198)||(23402080-23402240)
chr7 (36-134)||(8133331-8133429)
chr7 (36-187)||(5781694-5781844)
chr7 (63-198)||(7743135-7743270)
[»] chr8 (9 HSPs)
chr8 (36-198)||(23176495-23176656)
chr8 (40-198)||(28220741-28220898)
chr8 (36-197)||(7290897-7291058)
chr8 (36-198)||(4108623-4108784)
chr8 (244-325)||(19924080-19924161)
chr8 (54-198)||(18756375-18756519)
chr8 (36-197)||(3038584-3038744)
chr8 (36-129)||(6267282-6267375)
chr8 (41-134)||(34685958-34686051)
[»] chr4 (8 HSPs)
chr4 (36-198)||(17612512-17612674)
chr4 (38-198)||(2570658-2570818)
chr4 (36-198)||(2266565-2266726)
chr4 (47-139)||(9743779-9743871)
chr4 (36-145)||(2708051-2708159)
chr4 (41-190)||(49878858-49879006)
chr4 (36-92)||(54995613-54995669)
chr4 (80-142)||(5915034-5915096)
[»] chr1 (13 HSPs)
chr1 (36-198)||(27118508-27118670)
chr1 (36-197)||(15964278-15964439)
chr1 (36-198)||(13876627-13876789)
chr1 (61-198)||(16135526-16135663)
chr1 (36-197)||(25943376-25943537)
chr1 (36-129)||(16127695-16127788)
chr1 (41-139)||(3120629-3120727)
chr1 (36-134)||(31804856-31804954)
chr1 (36-197)||(10758009-10758170)
chr1 (41-134)||(47554938-47555031)
chr1 (39-92)||(43579462-43579515)
chr1 (80-163)||(422205-422288)
chr1 (102-198)||(5500598-5500693)
[»] scaffold0200 (1 HSPs)
scaffold0200 (38-198)||(24526-24686)
[»] chr3 (18 HSPs)
chr3 (36-198)||(32180459-32180621)
chr3 (36-198)||(19606622-19606784)
chr3 (36-198)||(26000710-26000872)
chr3 (36-197)||(47930376-47930537)
chr3 (36-139)||(45879254-45879357)
chr3 (36-198)||(40640339-40640501)
chr3 (36-109)||(7568516-7568589)
chr3 (36-139)||(7758191-7758293)
chr3 (36-131)||(44880968-44881063)
chr3 (36-198)||(38392336-38392498)
chr3 (36-135)||(51878292-51878390)
chr3 (36-127)||(49359407-49359498)
chr3 (80-167)||(36689674-36689761)
chr3 (42-96)||(31706777-31706831)
chr3 (114-198)||(31706528-31706612)
chr3 (80-142)||(29923129-29923191)
chr3 (80-142)||(29972282-29972344)
chr3 (80-198)||(47871210-47871328)
[»] chr5 (11 HSPs)
chr5 (36-139)||(22616671-22616774)
chr5 (41-142)||(29766566-29766667)
chr5 (36-139)||(41417346-41417449)
chr5 (36-198)||(36055583-36055744)
chr5 (36-193)||(33163693-33163849)
chr5 (38-198)||(10237593-10237752)
chr5 (36-145)||(31878561-31878671)
chr5 (36-131)||(21320929-21321024)
chr5 (52-198)||(27579220-27579366)
chr5 (102-143)||(25654593-25654634)
chr5 (82-198)||(12080442-12080558)
[»] chr6 (9 HSPs)
chr6 (36-131)||(34994009-34994104)
chr6 (36-134)||(11083927-11084024)
chr6 (244-325)||(407005-407086)
chr6 (39-139)||(6613760-6613860)
chr6 (36-134)||(26301693-26301795)
chr6 (36-139)||(4104194-4104297)
chr6 (36-109)||(30341202-30341275)
chr6 (36-139)||(19631927-19632028)
chr6 (80-166)||(25441709-25441795)
[»] scaffold0050 (1 HSPs)
scaffold0050 (36-139)||(5768-5870)
[»] scaffold0312 (1 HSPs)
scaffold0312 (80-163)||(8284-8367)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 207 - 370
Target Start/End: Complemental strand, 18058753 - 18058588
Alignment:
Q  207 aaaaagtcaattttcaaacttcatcgca--aaagccccataaattatatacacgccataactacacccagctgcacacctttggcagtaaaagaaccaaa 304  Q
    ||||||||||||||| |||| || || |  ||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  18058753 aaaaagtcaattttctaactgcaccgtagaaaaaccccataaattatataccagccataactacaccgagctgcacacctttggcagtaaaagaaccaaa 18058654  T
Q  305 tctgagaactaaaaacacccatatactatgatgcatgacaatttcacaaaagtttgtttttacaca 370  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  18058653 tctgagaactaaaaacacccagatactatcatgcatgacaatttcacaaaagtttgtttttacaca 18058588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 6177954 - 6178114
Alignment:
Q  38 taaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatc 137  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |   ||| |||||||| |||||||| ||||||| ||||||| ||    
T  6177954 taaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtggtc 6178053  T
Q  138 catcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    || ||||| || | ||| | |||||||||||| |||||||  |||| ||||||||||||||    
T  6178054 caccaacatgacactagctgacatgacatcggcagttatactattggctaaacaaaataac 6178114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 18947478 - 18947382
Alignment:
Q  38 taaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| |||||||||||||||    
T  18947478 taaacatagattctcatttgtgcattaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtg 18947382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 18059232 - 18059070
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||||     
T  18059232 attaaatatagattctcgtttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaacaaggtaaagtttagttttagagtgg 18059133  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    || || | ||  | | ||| |||||||||||||  | |||||  |||||||||||||||||||    
T  18059132 tctattagcagcacactagctaacatgacatcgacaattatactattgactaaacaaaataac 18059070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 39788480 - 39788320
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||     
T  39788480 attaaacatagattctgatttgtgcactaaaattgaaattccccttaatatttcgtatgagaactgatttgtaataaggtaaagtttatttttagagtgg 39788381  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaata 196  Q
    |||| || || || |  | || |||||||||||  |||||||  |||||||||||||||||    
T  39788380 tccaccagcaggacaccaattgacatgacatcgacagttatactattgactaaacaaaata 39788320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 41644050 - 41644211
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaata-ttttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||| | ||| |||||||| |||||| | |||||||||||||||    
T  41644050 attaaacatagtttctcatttgtgcactaagattgaaattccccttaatatttttgtatgaggactgatttgtaataaggtagagtttagttttagagtg 41644149  T
Q  135 atccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaata 196  Q
     |||| || || || | ||| | ||||||||||   | |||||| |||| ||||||||||||    
T  41644150 gtccaccagcatgacactagctgacatgacatcaacaattatattattggctaaacaaaata 41644211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 27138891 - 27138785
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||| |||||||| | |||||||||||||| ||||||||||||| ||| | ||| |||||||| ||||||||||||| |||||||||      
T  27138891 attaaacatagattcccatttgtgcactaagattgaaattcaccttaatattttgcatgaggacttatttgtaataaggtaaaatttaattttagagtag 27138792  T
Q  136 tccatca 142  Q
    |||||||    
T  27138791 tccatca 27138785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 17244935 - 17244837
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcca 139  Q
    ||||||||||||||||||| | |||||||||||||  ||||||||||||||||| | | | |||||||| |||||||| ||||||||||||||| ||||    
T  17244935 acatagattctcatttgtgcactaagattgaaattttccttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtcca 17244837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 41713340 - 41713501
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||| ||||| | ||| | |||||||||||||| |||||||| || | ||| |||||||| ||| ||||| ||||||||||||||     
T  41713340 attaaacatagattctcacttgtgcactaaaaatgaaattcccctta-tattttgtgtgaggactgatttgtaataagataaaacttagttttagagtgg 41713438  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| ||||| || | ||| | |||||| || | || |||||  |||||||||||||||||||    
T  41713439 tccaccaacatgacactagctgacatgatattgataattatactattgactaaacaaaataac 41713501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 19093640 - 19093744
Alignment:
Q  44 tagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaa 143  Q
    ||||||| |||||||| | |||||||||||||| ||||||||||||||| | | ||| |||||||| |||||||| ||||||||||||||| |||  |||    
T  19093640 tagattcccatttgtgcagtaagattgaaattctccttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcctccaa 19093739  T
Q  144 caaga 148  Q
    |||||    
T  19093740 caaga 19093744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 15651026 - 15651167
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||| ||||||||||| | ||| |||||||||| ||| ||||||||||||| | ||| |||||||| || ||||| |||| ||||||||||     
T  15651026 attaaacatagaatctcatttgtgcactaaaattgaaattctcctaaatattttgtatgaggactgatttgtaataaagtaaagtttaattttagagtgg 15651125  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttata 177  Q
    |||| |   | || ||||| | |||||||||||| |||||||    
T  15651126 tccaccggtaggacattagatgacatgacatcggcagttata 15651167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 38249979 - 38249905
Alignment:
Q  63 taagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcca 139  Q
    |||||||||||||||||||||||||  ||||| | ||| ||||||||||||||||||||||||||||||||| ||||    
T  38249979 taagattgaaattccccttaatatt--gtatgaggactgatttgtaacaaggtaaaatttagttttagagtggtcca 38249905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 42005565 - 42005673
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | |||||||||||||  |||| |||||||||||| || || |||||||| ||  ||||| ||| ||||| ||||     
T  42005565 attaaacatagattctcatttgtgcactaagattgaaattttcctt-atattttgtatgagagctgatttgtaataaaataaaacttaattttaaagtgg 42005663  T
Q  136 tccatcaaca 145  Q
    ||||||||||    
T  42005664 tccatcaaca 42005673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 198
Target Start/End: Complemental strand, 18779268 - 18779115
Alignment:
Q  37 ttaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgat 136  Q
    ||||||||||||||||||||||| | ||||||||||||| || |||        ||||   ||| |||||||| |||||||| |||||||||||||||||    
T  18779268 ttaaacatagattctcatttgtgcactaagattgaaatttccttta--------tatgacgactgatttgtaataaggtaaagtttagttttagagtgat 18779177  T
Q  137 ccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |   ||  | || | ||| | ||||||||||||||||||||  |||||||||||||||||||    
T  18779176 catccagtaggacactagcttacatgacatcggtagttatactattgactaaacaaaataac 18779115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 34441793 - 34441736
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatg 94  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||    
T  34441793 attaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatg 34441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 18514597 - 18514544
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatg 94  Q
    ||||||||||||||||||| | ||||||||||||| || |||||||||||||||    
T  18514597 acatagattctcatttgtgcactaagattgaaatttccattaatattttgtatg 18514544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 34441718 - 34441588
Alignment:
Q  67 attgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacat 166  Q
    |||||||||||||||| ||||||||||| | ||| |||||||| ||| ||||  ||||||||| ||||||||| ||||| || | ||| | |||||| |     
T  34441718 attgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccaccaacatgacactagctgacatgataa 34441620  T
Q  167 cggtagttatataattgactaaacaaaataac 198  Q
    ||| | |||||  |||||| ||| ||||||||    
T  34441619 cggcaattatactattgaccaaataaaataac 34441588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 22955183 - 22955021
Alignment:
Q  35 cattaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  22955183 cattaaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtatgagaactgatttgtaataaggtaaagtttagttttagagtg 22955084  T
Q  135 atccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
     |||| || || || | |||  ||||||||| | |||||||||  || | ||||||||||||||    
T  22955083 gtccaccagcaggacaatag-caacatgacagcagtagttatactataggctaaacaaaataac 22955021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 10675124 - 10675026
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcca 139  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| || ||||| |||||| |||||||||||||    
T  10675124 acatggattcccatttgtgtattaagatttaaattccccttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatcca 10675026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 40382067 - 40382165
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||| | ||| |||||||| |||||||| |||||||||||||||    
T  40382067 attaaacatagattatcatttgtgcactaagattgaaatttcccttaatattttgtatgcggactgatttgtaataaggtaaagtttagttttagagtg 40382165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 4618625 - 4618464
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||   ||| |||||||  ||| |||| |||||||||||||||     
T  4618625 attaaacatagattctcatttgtgcaccaagattgaaattccccttaatattttgtatgatgactgatttgtagtaagataaagtttagttttagagtgg 4618526  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    |||| || ||  | ||||| | |||||||||||  |||||||  ||||  ||||||||||||    
T  4618525 tccaccagcagaacattagctcacatgacatcgacagttataccattggttaaacaaaataa 4618464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 49002402 - 49002505
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||| | ||| ||||||||  ||||||| |||||||||||||||     
T  49002402 attaaacatagattcccatttgtgcactaagattaaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtgg 49002501  T
Q  136 tcca 139  Q
    ||||    
T  49002502 tcca 49002505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 37854166 - 37854003
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaact-aatttgtaacaaggtaaaatttagttttagagtg 134  Q
    |||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||| | ||| |||||| || || ||||| |||| ||||||||||    
T  37854166 attaaacatagattttcatttgtacactaagattgaaattccccttaatattttgtatgaggactgaatttggaataaagtaaagtttaattttagagtg 37854067  T
Q  135 atccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
     |||| |||||||| | ||| | || ||||| |    ||||||  |||||||||||||||||||    
T  37854066 gtccaccaacaagacactagctgacgtgacacctacggttatactattgactaaacaaaataac 37854003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 4902498 - 4902596
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    |||||||||||||||  | || || | |||||| ||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||    
T  4902498 attaaacatagattccaaattatgcactaagatagaaattccccttaatattttgtatgagtactaatttgtaataaggtaaagtttagttttagagtg 4902596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 23402240 - 23402080
Alignment:
Q  38 taaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatc 137  Q
    ||||||| |||||||||||||| | ||||| ||||||| |||||||||||||||| |   ||| |||||||| | | |||| ||||||||||||||| ||    
T  23402240 taaacattgattctcatttgtgcactaagactgaaatttcccttaatattttgtacgatgactgatttgtaataggataaagtttagttttagagtggtc 23402141  T
Q  138 catcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |  ||||| || | ||| | |||| ||||||| |||||||  |||| ||||||||||||||    
T  23402140 ccccaacatgacactagctgacataacatcggcagttatactattggctaaacaaaataac 23402080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 8133429 - 8133331
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    ||||||| |||||||| ||||||| | |||||||||||||||||||||||||||  |||   ||| |||||||| |||||||| |||||||||||||||    
T  8133429 attaaacgtagattcttatttgtgcagtaagattgaaattccccttaatattttacatgaagactgatttgtaataaggtaaagtttagttttagagtg 8133331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 5781694 - 5781844
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||   ||| |||||||| || |||||| ||||||||| ||||     
T  5781694 attaaacatagattctcatttgtgcactaagattgaaatt-ccctttatattttgtatgatgactgatttgtaataaagtaaaacttagttttaaagtgg 5781792  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgacta 187  Q
    | || ||||| || | ||| | |||||| ||||| | |||||  ||||||||    
T  5781793 tgcaccaacatgacactagctgacatgatatcggcaattatactattgacta 5781844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 7743135 - 7743270
Alignment:
Q  63 taagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatg 162  Q
    |||||||||||| | | |||||||||| |||| |  ||  ||||||| |||||||| ||||||||||||||| ||||||||||  | |||||   |||||    
T  7743135 taagattgaaatgctctttaatattttatatgagggctgctttgtaataaggtaaagtttagttttagagtggtccatcaacattacattagccgacatg 7743234  T
Q  163 acatcggtagttatataattgactaaacaaaataac 198  Q
    ||||||  |||||||  |||||||||||||||||||    
T  7743235 acatcgacagttatactattgactaaacaaaataac 7743270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 23176656 - 23176495
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||||||||||| ||| ||||  ||||||||||||||     
T  23176656 attaaacatagattctcatttgtgcactaagattgaaattcccctta-tattttgtatgaggactaatttgtaataagataaagcttagttttagagtgg 23176558  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||||||||| || | ||| | |||||| ||||| | |||||  ||||| |||||||||||||    
T  23176557 tccatcaacatgacactagctgacatgatatcggaaattatactattgaataaacaaaataac 23176495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 40 - 198
Target Start/End: Complemental strand, 28220898 - 28220741
Alignment:
Q  40 aacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcca 139  Q
    ||||||||||||| |||||  | |||||||||||||||||||| ||||||||||| | ||| |||||||| ||| ||||  |||||||||||||| ||||    
T  28220898 aacatagattctcttttgtacactaagattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtcca 28220800  T
Q  140 tcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
     ||||| || |||||  ||||||| ||||  | |||||  |||||||||||||||||||    
T  28220799 ccaacatgacattagcaaacatgatatcgacaattatactattgactaaacaaaataac 28220741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 7290897 - 7291058
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||| ||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| | | | |||||||| ||| |||| |||||||||||||||     
T  7290897 attagacatagattttcatttgtgcactaagattgaaattcctcttaatattttgtatgaggattgatttgtaataagataaagtttagttttagagtgg 7290996  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    | ||  |||| || | ||||| | |||||||||  |||||||  |||| |||||||||||||    
T  7290997 ttcacaaacaggacactagttgatatgacatcgacagttatactattgcctaaacaaaataa 7291058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 4108784 - 4108623
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||   |||  ||||||| ||| ||||  ||||||||| ||||     
T  4108784 attaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaagactgttttgtaataagataaagcttagttttaaagtgg 4108686  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| ||||| || | ||| | |||||| | ||| | |||||| |||||||||||||||||||    
T  4108685 tccaccaacatgacactagctgacatgataacggcaattatattattgactaaacaaaataac 4108623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 19924161 - 19924080
Alignment:
Q  244 taaattatatacacgccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca 325  Q
    |||| |||||||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  19924161 taaactatataccagccataactacacgcagctgcacacctttggcaataaaagaaccaaatctgagcactaaaagcaccca 19924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 198
Target Start/End: Complemental strand, 18756519 - 18756375
Alignment:
Q  54 tttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatatta 153  Q
    |||||| | |||||||  ||||||||||||||||||||||| | ||  |||||||| ||||||||  |||||||||||||| |||| ||  | || ||||    
T  18756519 tttgtgcactaagattttaattccccttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtccaccagtaggacatta 18756420  T
Q  154 gttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    | |||||| ||||||| | |||||| |||| ||||||||||||||    
T  18756419 gctaacataacatcggcaattatattattggctaaacaaaataac 18756375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 3038584 - 3038744
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||| ||||||| ||||| || | |||||||||||||||| |||||||||||||||   | | |||||||| |||||||| |||||||||||||||     
T  3038584 attaaacttagattcccatttatgcactaagattgaaattccc-ttaatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtgg 3038682  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    |||| || ||||| | | ||| |||||||||| | | || ||  |||| |||||||||||||    
T  3038683 tccaccagcaagacacttgttgacatgacatcagcaattctactattggctaaacaaaataa 3038744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 6267375 - 6267282
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagtttta 129  Q
    ||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||   ||| |||||||| ||| |||| ||||||||||    
T  6267375 attaaacatagatttgcatttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaataagataaagtttagtttta 6267282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 34685958 - 34686051
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    ||||| ||||||||||||| | ||||| ||||||| |||||||||||||||||| | ||| |||||||| || ||||| |||||| ||||||||    
T  34685958 acatatattctcatttgtgcactaagactgaaatttcccttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtg 34686051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 17612512 - 17612674
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||  |||||||||  ||||||||||||||||||| ||||||| |||| | |||||||||||| ||||||||||||||||||||||||     
T  17612512 attaaacatagattgccatttgtgtgctaagattgaaattcccctttatattttctatgaggactaatttgtaataaggtaaaatttagttttagagtgg 17612611  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| ||||| || | ||| | |||||||||||  |||||||  |||| ||||| ||||||||    
T  17612612 tccaccaacaggacactagctgacatgacatcgacagttatactattggctaaataaaataac 17612674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 2570658 - 2570818
Alignment:
Q  38 taaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatc 137  Q
    ||||||||||||  |||||||| | |||||||||||||| |||||||||||||| || | | | |||||||| |||||||| ||||||||||||||| ||    
T  2570658 taaacatagatttccatttgtgcactaagattgaaattcaccttaatattttgtttgaggaatgatttgtaataaggtaaagtttagttttagagtggtc 2570757  T
Q  138 catcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    || || ||  | | ||| |||||||||||||  | |||||| |||| ||||||| ||||||    
T  2570758 caccagcagaacactagctaacatgacatcgacaattatattattgtctaaacataataac 2570818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 2266726 - 2266565
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||| | ||| |||||||| || ||||| |||| |||||||| |     
T  2266726 attaaacatagattcccatttgtgcactaagattgaaatttcccttaatattttgtatgaggactgatttgtaataatgtaaagttta-ttttagagggg 2266628  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| || || || | ||| | ||||| |||||  |||||||  |||| ||||||||||||||    
T  2266627 tccaccagcaggacactagctgacatggcatcgacagttatactattggctaaacaaaataac 2266565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 9743779 - 9743871
Alignment:
Q  47 attctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcca 139  Q
    ||||||||||||| | ||||||| |  ||||||||||||||||||||| | |||  ||||||| || ||||||||||||||||||||||||||    
T  9743779 attctcatttgtgcactaagatttatgttccccttaatattttgtatgaggactggtttgtaataatgtaaaatttagttttagagtgatcca 9743871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 2708051 - 2708159
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||  ||||||||||| |  || |||||||| ||| ||||  ||||||||||||||     
T  2708051 attaaacatggattctcatttgtgcactaagattgaaattcccctt-ctattttgtatgagggctgatttgtaataagataaagcttagttttagagtgg 2708149  T
Q  136 tccatcaaca 145  Q
    |||| |||||    
T  2708150 tccaccaaca 2708159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 49878858 - 49879006
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccat 140  Q
    ||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||   ||| |||| ||| |||||||| |||||| ||||| || ||||     
T  49878858 acataaattttcatttgtgcattaagattgaaatttcccttaatattttgtatgatgactgatttataataaggtaaagtttagtcttagaatggtccac 49878957  T
Q  141 caacaagatattagttaacatgacatcggtagttatataattgactaaac 190  Q
    || | ||| | ||||| ||||||||||   | |||||| |||||||||||    
T  49878958 cagc-agacactagttgacatgacatcaacaattatatcattgactaaac 49879006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 54995669 - 54995613
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgta 92  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  54995669 attaaatatagattcttatttgtgtactaagattgaaattccccctaatattttgta 54995613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 5915096 - 5915034
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatca 142  Q
    |||||||||| |||| | |||||||||||| || |||||||||||| ||| |||| |||||||    
T  5915096 ttaatattttttatgaggactaatttgtaataaagtaaaatttagtgttacagtggtccatca 5915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 27118508 - 27118670
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||   ||| |||||||| |||||||| | ||||||||||||||    
T  27118508 attaaacatagattctcattcgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaataaggtaaagtatagttttagagtga 27118607  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| || || |||  ||| | || |||||| | ||||||||| |||||||||||| ||||||    
T  27118608 tccaccagcaggatcctagctgacgtgacattgatagttatattattgactaaacacaataac 27118670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 15964278 - 15964439
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||||||||||     
T  15964278 attaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagagtgg 15964377  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    | ||| |  | || | ||| | |||||||||||  |||||||  |||| |||||||||||||    
T  15964378 tacattagtaggacactagctgacatgacatcgacagttatactattggctaaacaaaataa 15964439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 13876789 - 13876627
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||| | ||  |||||||| |||||||| |||||||||||||||     
T  13876789 attaaacatagattcccatttgtgcactaatattgaaattccccttaatattttgtatgagtaccgatttgtaataaggtaaagtttagttttagagtgg 13876690  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| || || || | ||| | |||||||||||  |||||||   ||  ||||||||||||||    
T  13876689 tccaccagcatgacactagctgacatgacatcgacagttataccgttcgctaaacaaaataac 13876627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 16135526 - 16135663
Alignment:
Q  61 attaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaaca 160  Q
    |||||||||||||||| | ||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||| |||| ||  | || | ||||| |||    
T  16135526 attaagattgaaattctcattaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtccaccagtatgacactagttgaca 16135625  T
Q  161 tgacatcggtagttatataattgactaaacaaaataac 198  Q
    ||||||||  |||||||  |||  ||||||||||||||    
T  16135626 tgacatcgacagttatactattagctaaacaaaataac 16135663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 25943376 - 25943537
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||||||||||||| | |||||||||||||| |   ||| |||||||| ||| |||||||||||  |||||||     
T  25943376 attaaacatagattctcatttgtgcaataagattgaaatttctcttaatattttgtacgatgactgatttgtaataagataaaatttagtagtagagtgg 25943475  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    |||| |||||  ||  ||||| |||||| ||||  | |||||  |||| |||||||||||||    
T  25943476 tccaccaacagaatgctagttgacatgagatcgacaattatactattggctaaacaaaataa 25943537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 16127695 - 16127788
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagtttta 129  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||||||||||  ||| | |||  ||||||| |||||||| ||||||||||    
T  16127695 attaaacatagattctcatttgtgcactaagattgagattccccttaatattttaaatgaggactggtttgtaataaggtaaagtttagtttta 16127788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 3120727 - 3120629
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcca 139  Q
    |||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||| | ||| |||||||| |||||||| |||| | |||||||| ||||    
T  3120727 acatagattcacatttgtgcattaaaattgaaataccccttaatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagagtggtcca 3120629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 31804954 - 31804856
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    ||||||||||||||||||||| || | ||||||||||||| ||||||||||||| |||| ||| |  ||||||| |||||||| |||| ||||| ||||    
T  31804954 attaaacatagattctcatttatgcactaagattgaaatttcccttaatattttatatgagaattggtttgtaataaggtaaagtttaattttatagtg 31804856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 10758170 - 10758009
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||| ||||||||||||| | ||||||||||||| | ||||||||||| ||||   ||| |  ||||| || | ||||||||||||||||||||    
T  10758170 attaaacatatattctcatttgtgcactaagattgaaatttctcttaatattttatatgatgactgaagtgtaataaagcaaaatttagttttagagtga 10758071  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    |||| || || || | ||  | |||| ||||||| |||||||  |||  |||||||||||||    
T  10758070 tccaccagcaggacactaactcacataacatcggcagttatactattagctaaacaaaataa 10758009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 47554938 - 47555031
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    ||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||   ||| |||||||| |||||||| |||| | ||||||||    
T  47554938 acatagattctcatttgtgcactaagatttaaattcctcttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtg 47555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 43579462 - 43579515
Alignment:
Q  39 aaacatagattctcatttgtgtattaagattgaaattccccttaatattttgta 92  Q
    ||||||||||||| ||||||| | |||||||||||||| |||||||||||||||    
T  43579462 aaacatagattcttatttgtgcactaagattgaaattctccttaatattttgta 43579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 422205 - 422288
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatga 163  Q
    ||||||||||||||| | ||||| |||||| || ||||| ||||||  ||||||| ||||||||||||| ||||| | ||||||    
T  422205 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtccatcaacaagacattagctgacatga 422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 5500598 - 5500693
Alignment:
Q  102 atttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| ||| ||||||||||||||||||||||||||||| | |||  | | ||| | ||||||||||| ||||||||  |||  ||||||||||||||    
T  5500598 atttataataaggtaaaatttagttttagagtgatcca-cgacagaacactagctgacatgacatcgatagttatactattagctaaacaaaataac 5500693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 24686 - 24526
Alignment:
Q  38 taaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatc 137  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |   ||| |||||||| |||||||| ||||||| ||||||||||    
T  24686 taaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtgatc 24587  T
Q  138 catcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    || ||||| || | ||| | |||||||||||| |||||||  |||| || |||||||||||    
T  24586 caccaacatgacactagctgacatgacatcggcagttatactattggcttaacaaaataac 24526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 32180621 - 32180459
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||  |||||||| | |||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| |||||||||||||||     
T  32180621 attaaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtgg 32180522  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    |||| || || || | |||   |||||||||| | |||||||  |||| ||||||||||||||    
T  32180521 tccaccagcaggacactagccgacatgacatcagcagttatactattggctaaacaaaataac 32180459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 19606784 - 19606622
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||  |||||||| |  ||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| |||||||||||||||     
T  19606784 attaaacatagatttccatttgtgcaccaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtgg 19606685  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    ||||  | || || | ||| | ||||||||||||  || |||  |||||||||||||||||||    
T  19606684 tccacgagcaggacactagctgacatgacatcggcggtaatactattgactaaacaaaataac 19606622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 26000710 - 26000872
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||| | ||| |||||||| || ||||| |||||||||||||||     
T  26000710 attaaacatagattctcatttgtgcactaaaattgaaatttcccttaatattttgtatgagtactgatttgtaataaagtaaagtttagttttagagtgg 26000809  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    || ||||  | |||| ||| | |||||| ||||  |||||||  ||||| | |||||||||||    
T  26000810 tctatcagtaggatagtagctgacatgatatcgacagttatactattgattcaacaaaataac 26000872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 47930537 - 47930376
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    ||| |||||||| || |||||  ||||||||||||||     
T  47930537 attaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtataatgactgatttgtaataaagtaaagcttagttttagagtgg 47930438  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataa 197  Q
    ||||  |||| || | ||  | | |||||||||| |||||||  |||  |||||||||||||    
T  47930437 tccactaacaggacactaactgatatgacatcggcagttatactattagctaaacaaaataa 47930376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 45879357 - 45879254
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||| | ||| |||||||| |||||||| ||||| |||| ||||     
T  45879357 attaaacatagattctcatttgtgcactaacattgaaattcccctttatattttgtatgaggactgatttgtaataaggtaaagtttagctttaaagtgg 45879258  T
Q  136 tcca 139  Q
    ||||    
T  45879257 tcca 45879254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 40640501 - 40640339
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||| ||| ||||||||||||| | ||| |||||||||| ||||||||||||||||| | ||| |||||||| ||  |||| ||||||||||||||||    
T  40640501 attaaagatatattctcatttgtgcactaaaattgaaattctccttaatattttgtatgaggactgatttgtaataaaataaagtttagttttagagtga 40640402  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    || | || || |  |  |||| ||||||||| || | |||||  |||||||||||||||||||    
T  40640401 tctaccagcagggcaccagttgacatgacataggcacttatactattgactaaacaaaataac 40640339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 7568589 - 7568516
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaa 109  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||| ||||||||    
T  7568589 attaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaa 7568516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 7758293 - 7758191
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||   ||| |||||||| ||| ||||  ||||||||||||||     
T  7758293 attaaacatagattctcatttgtgcactaagattgaaattcccctt-atattttgtatgaagactgatttgtaaaaagataaagcttagttttagagtgc 7758195  T
Q  136 tcca 139  Q
    ||||    
T  7758194 tcca 7758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 44880968 - 44881063
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttaga 131  Q
    ||||||||||||||| |||||||| | || |||||||||||||||||||||||| |||| | | | |||||||| |||||||| ||||||||||||    
T  44880968 attaaacatagattcacatttgtgcactaggattgaaattccccttaatattttatatgaggattgatttgtaataaggtaaagtttagttttaga 44881063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 38392498 - 38392336
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||| |||||| || | ||||||||||||| |||||||||||||||| |   ||| |||||||| || ||||||||||||||||||  |     
T  38392498 attaaacatagattttcatttatgcactaagattgaaatttcccttaatattttgtaagatgactgatttgtaataatgtaaaatttagttttagaacgg 38392399  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    | || ||||| || | ||| | | |||| ||| | |||||||| |||| ||||||||||||||    
T  38392398 ttcaccaacatgacactagctgatatgatatcagcagttatattattggctaaacaaaataac 38392336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 51878292 - 51878390
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||||||||||||||| || | ||||||||||||| | |||||||||||||||| | ||| | |||||| |||||||| |||| |||||||||||    
T  51878292 attaaacatagattctcatttatgcactaagattgaaatt-ctcttaatattttgtatgagtactgaattgtaataaggtaaagtttaattttagagtga 51878390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 49359498 - 49359407
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttt 127  Q
    ||||||||||||||   ||||||| | |||||||||||||||| ||||||||||||||| | ||| |||| ||| |||||||| ||||||||    
T  49359498 attaaacatagatttctatttgtgcactaagattgaaattccctttaatattttgtatgaggactgatttataataaggtaaagtttagttt 49359407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 36689674 - 36689761
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacatc 167  Q
    ||||||||||||||| | ||| |||||||| || ||||| ||||||||||  ||| ||||||||||||| | ||| | ||||||||||    
T  36689674 ttaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtccatcaacaagacactagctgacatgacatc 36689761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 31706831 - 31706777
Alignment:
Q  42 catagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtg 96  Q
    |||||||||||||||||| | || |||||||| |||| |||||||||||||||||    
T  31706831 catagattctcatttgtgcactacgattgaaactccctttaatattttgtatgtg 31706777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 31706612 - 31706528
Alignment:
Q  114 gtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    ||||| |||||| |||||||| |||||||||| || | ||||||||||||||||   | |||||  ||||| |||||||||||||    
T  31706612 gtaaagtttagtcttagagtggtccatcaacaggacactagttaacatgacatcaaaaattatactattgattaaacaaaataac 31706528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 29923191 - 29923129
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatca 142  Q
    |||||||||||||   ||||| |||||||| || |||||||||||||||| |||| |||||||    
T  29923191 ttaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatca 29923129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 29972344 - 29972282
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatca 142  Q
    |||||||||||||   ||||| |||||||| || |||||||||||||||| |||| |||||||    
T  29972344 ttaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatca 29972282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 47871210 - 47871328
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacatcggtagttatata 179  Q
    |||||||||| |||| | ||| ||||||||||  ||||| |||| | ||||||||||||  || || || | ||||| ||||||||||   ||||||||     
T  47871210 ttaatattttatatgaggactgatttgtaacattgtaaagtttaatcttagagtgatccggcagcaggacactagttgacatgacatcaacagttatatt 47871309  T
Q  180 attgactaaacaaaataac 198  Q
    |||| ||||| ||||||||    
T  47871310 attggctaaataaaataac 47871328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 22616671 - 22616774
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| | ||| |||||||| |||||||| |||||||||||||||     
T  22616671 attaaacatagattctcatttgtgcactaaaattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtgg 22616770  T
Q  136 tcca 139  Q
    ||||    
T  22616771 tcca 22616774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 29766667 - 29766566
Alignment:
Q  41 acatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccat 140  Q
    |||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||| |||||    
T  29766667 acatggattcccatttgtgcattaagatttaaattccccttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtccat 29766568  T
Q  141 ca 142  Q
    ||    
T  29766567 ca 29766566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 41417449 - 41417346
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||   ||| |||||||| ||||||||||||||||||| | |||    
T  41417449 attaaacatagattctcatttgtgcactaagattgaaattccccttattattttgtatgatgactgatttgtaataaggtaaaatttagttttaaaatga 41417350  T
Q  136 tcca 139  Q
    ||||    
T  41417349 tcca 41417346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 36055744 - 36055583
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||| ||| | |||||||| |||||||| |||||||||||||||     
T  36055744 attaaacatagattctcatttgtgcactaagattgaaattccc-ttaatatcttgtatgagaattgatttgtaataaggtaaagtttagttttagagtgg 36055646  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
     ||| || || || | ||||| || ||||||||  |||||||  |||  ||||||||||||||    
T  36055645 gccaccagcacgacactagttgacttgacatcgccagttatactattagctaaacaaaataac 36055583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 33163693 - 33163849
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||| |||||||| |||| |||||||||||||||  |||||||||||||||||   ||| |||||||| |||||||| |||||||||| ||||     
T  33163693 attaaacataaattctcatgtgtgcattaagattgaaattttccttaatattttgtatgaagactgatttgtaataaggtaaagtttagttttaaagtgg 33163792  T
Q  136 tccatcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaa 193  Q
    |||| || || || | ||| | |||||||||||| |||||||  ||||||||||||||    
T  33163793 tcca-cagcatgacactagctgacatgacatcggcagttatactattgactaaacaaa 33163849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 10237593 - 10237752
Alignment:
Q  38 taaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatc 137  Q
    |||||||||||||||||||||  | ||||||||||||| |||||||||||||||| |   |||||||||||| |||||||| ||||||| ||||||| ||    
T  10237593 taaacatagattctcatttgtacactaagattgaaatttcccttaatattttgtacgatgactaatttgtaataaggtaaagtttagttctagagtggtc 10237692  T
Q  138 catcaacaagatattagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
     | ||||| || ||||| | |||||||||| |  ||||||  |||| ||||||||||||||    
T  10237693 taccaacatgacattagctgacatgacatc-gacgttatactattggctaaacaaaataac 10237752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 31878561 - 31878671
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaata-ttttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    |||||||||||||||  ||||||| | ||||||||||||||  ||||||| ||||||||| ||||| || ||||| |||||||| |||| ||||||||||    
T  31878561 attaaacatagattcctatttgtgcactaagattgaaattcttcttaatatttttgtatgggaactgatctgtaataaggtaaagtttaattttagagtg 31878660  T
Q  135 atccatcaaca 145  Q
     |||| |||||    
T  31878661 gtccaccaaca 31878671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 21320929 - 21321024
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttaga 131  Q
    |||||||||||||||||||||| | | ||| ||||||||| | |||||||||||||||| | | | |||||||  |||||||| ||||||||||||    
T  21320929 attaaacatagattctcatttgagcactaaaattgaaatttcgcttaatattttgtatgaggattgatttgtaggaaggtaaagtttagttttaga 21321024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 27579220 - 27579366
Alignment:
Q  52 catttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatat 151  Q
    |||||||| | |||||||||||||| |||||||||||||| |  | | | |||||||| |||||||| ||||||||||||||| |||| ||  |  | |     
T  27579220 catttgtgcactaagattgaaattctccttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccagtagaacac 27579319  T
Q  152 tagttaacatgacatcggtagttatataattgactaaacaaaataac 198  Q
    ||| |||||||||||||  |||||||| |||| ||||| | ||||||    
T  27579320 tagctaacatgacatcgacagttatattattgtctaaagataataac 27579366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 25654593 - 25654634
Alignment:
Q  102 atttgtaacaaggtaaaatttagttttagagtgatccatcaa 143  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  25654593 atttgtaataaggtaaagtttagttttagagtggtccatcaa 25654634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 12080558 - 12080442
Alignment:
Q  82 aatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacatcggtagttatataat 181  Q
    ||||||||||||| | ||| |||||||| |||||||| |||||| ||| |||| |||| || || || | ||| | ||||||||||   | |||| | ||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcaggacactagctgacatgacatcaacaattatgttat 12080459  T
Q  182 tgactaaacaaaataac 198  Q
     ||||||||||||||||    
T  12080458 cgactaaacaaaataac 12080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 34994009 - 34994104
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttaga 131  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||  ||||| |||||||| ||| || ||||||||||||||    
T  34994009 attaaacatagattctcatttatgcactaagattgaaattccccttaatattttatataagaactgatttgtaataagatacaatttagttttaga 34994104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 11084024 - 11083927
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtg 134  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||  | ||| |||||||| ||| ||||  ||||||||||||||    
T  11084024 attaaacatagattctcatttgttcattaagattgaaattcccctt-atattttgtataaggactgatttgtaataagataaagcttagttttagagtg 11083927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 407005 - 407086
Alignment:
Q  244 taaattatatacacgccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca 325  Q
    ||||||||||||| |||||||||||||  ||||||||| |||||||| |||| |||||||||||||| |||| |||||||||    
T  407005 taaattatatacatgccataactacacgtagctgcacatctttggcaataaaggaaccaaatctgagcactacaaacaccca 407086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 6613860 - 6613760
Alignment:
Q  39 aaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatcc 138  Q
    ||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| | | | |||||||| ||||| || |||||| |||||||| |||    
T  6613860 aaacatagattcttatttgtgcactaagattgaaattctccttaatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagagtggtcc 6613761  T
Q  139 a 139  Q
    |    
T  6613760 a 6613760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 26301795 - 26301693
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattcccctta---atattttgtatgtgaactaatttgt-aacaaggtaaaatttagttttaga 131  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||   |||||||||||| ||||| |||||| || ||| ||||| ||| |||||||    
T  26301795 attaaacatagattctcatttgtgtactaagattgaaattccctttatatatattttgtatgagaactgatttgtaaataagataaaacttaattttaga 26301696  T
Q  132 gtg 134  Q
    |||    
T  26301695 gtg 26301693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 4104194 - 4104297
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||||||| |||| |||||||| | |||||||||||||| |||||||||||||||||   | | |||||||| |||| ||| |||||||||||||||     
T  4104194 attaaacataaattcccatttgtgcactaagattgaaattctccttaatattttgtatgaagattgatttgtaataaggcaaagtttagttttagagtgg 4104293  T
Q  136 tcca 139  Q
    ||||    
T  4104294 tcca 4104297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 30341202 - 30341275
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaa 109  Q
    |||||| |||||||| |||| ||| | |||||||||||||||||||||||||||||||| | ||||||||||||    
T  30341202 attaaatatagattcccattagtgcactaagattgaaattccccttaatattttgtatgaggactaatttgtaa 30341275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 19631927 - 19632028
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    |||||| ||| ||||||||||||| | |||||||||||||||||| |||||||||  || | |  ||||  ||| ||||||||| ||||||||||||||     
T  19631927 attaaaaataaattctcatttgtgcactaagattgaaattcccctcaatattttg--tgaggatcaattaataataaggtaaaacttagttttagagtgg 19632024  T
Q  136 tcca 139  Q
    ||||    
T  19632025 tcca 19632028  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 25441709 - 25441795
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatgacat 166  Q
    ||||||||||||||| | ||| |||||| | || |||||||||||| ||| |||| |||||||  |||| | ||| |||||||||||    
T  25441709 ttaatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtccatcacaaagacactagctaacatgacat 25441795  T

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Target: scaffold0050 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 5768 - 5870
Alignment:
Q  36 attaaacatagattctcatttgtgtattaagattgaaattccccttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtga 135  Q
    ||||||||| ||||| |||||||  |||||||| |||||| |  ||||||||||||||| ||||| |||| ||| |||||||| |||||||||||||||     
T  5768 attaaacatggattcgcatttgttcattaagatcgaaatttct-ttaatattttgtatgagaactgatttataataaggtaaagtttagttttagagtgg 5866  T
Q  136 tcca 139  Q
    ||||    
T  5867 tcca 5870  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 8367 - 8284
Alignment:
Q  80 ttaatattttgtatgtgaactaatttgtaacaaggtaaaatttagttttagagtgatccatcaacaagatattagttaacatga 163  Q
    ||||||||||||||| | ||||| |||||| || ||||| ||||||  ||||||| ||||||||||||| ||||| | ||||||    
T  8367 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtccatcaacaagacattagctgacatga 8284  T

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