View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12149_high_1 (Length: 441)

Name: NF12149_high_1
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12149_high_1
NF12149_high_1
[»] chr3 (9 HSPs)
chr3 (130-423)||(6942439-6942738)
chr3 (185-423)||(6787981-6788229)
chr3 (259-423)||(6939399-6939563)
chr3 (14-144)||(6788244-6788373)
chr3 (268-379)||(8467036-8467147)
chr3 (65-142)||(50302422-50302500)
chr3 (95-235)||(8466882-8467021)
chr3 (269-320)||(41035956-41036007)
chr3 (257-346)||(11484345-11484434)
[»] chr8 (1 HSPs)
chr8 (265-360)||(5354180-5354275)
[»] chr5 (2 HSPs)
chr5 (261-346)||(28362649-28362734)
chr5 (309-417)||(4314182-4314290)
[»] chr1 (1 HSPs)
chr1 (265-318)||(34564857-34564910)
[»] chr2 (2 HSPs)
chr2 (270-366)||(33720155-33720255)
chr2 (261-371)||(6683662-6683775)
[»] chr4 (1 HSPs)
chr4 (273-359)||(48681542-48681628)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 423
Target Start/End: Original strand, 6942439 - 6942738
Alignment:
Q  130 aagaaaaagatttaagaggaatatgactgtttatattggtttccctaccaacgttaacatggcatgttgcccataagtatgttagaacagcaaacccgtt 229  Q
    |||||||| ||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||    
T  6942439 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggtt 6942538  T
Q  230 caaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaag 323  Q
    |||||||||||| |||||||||| ||||||      |||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||    
T  6942539 caaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagag 6942638  T
Q  324 cagctgctgttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgcataaacactattgtccagattacaacatcacccctgaacc 423  Q
    ||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  6942639 cagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaaccctgaacc 6942738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 185 - 423
Target Start/End: Complemental strand, 6788229 - 6787981
Alignment:
Q  185 aacatggcatgttgcccataagtatgttagaacagcaaacccgttcaaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgttt 278  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||      |||| ||||||||||||||    
T  6788229 aacatgtcacgttgcccataagtatgttagatcagcaaacccgttcaaaaatcaaaagataaaagacaaagtaaacgcaaataataaacacacgatgttt 6788130  T
Q  279 ggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattatgagtgaaagattaaggtttacaatgcacaact 378  Q
    ||||||||| |||||| |||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6788129 ggtaacgaagttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaact 6788030  T
Q  379 tgtgca----taaacactattgtccagattacaacatcacccctgaacc 423  Q
    |||| |    |||||||||||||||||||||||||||||||||||||||    
T  6788029 tgtgtataattaaacactattgtccagattacaacatcacccctgaacc 6787981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 259 - 423
Target Start/End: Original strand, 6939399 - 6939563
Alignment:
Q  259 ataatgaacacacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattatgagtgaaagatt 358  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |    
T  6939399 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt 6939498  T
Q  359 aaggtttacaatgcacaacttgtgcataaacactattgtccagattacaacatcacccctgaacc 423  Q
    || |||||||||||||||| |||| ||||| |||||||||||||||||||||||| || ||||||    
T  6939499 aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccgtgaacc 6939563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 6788373 - 6788244
Alignment:
Q  14 tgtagcagcatgtagttaaagtacttgtgtaacatagagactgattaaaactgaaacaagatttgtattactgaatagagatgattaca----acaacac 109  Q
    ||||||||||||| |||||||||||||     ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    |||||||    
T  6788373 tgtagcagcatgttgttaaagtacttg-----cattgagactgcttaaaactgaaacaagatttgtattactggatagagatgattacaatttacaacac 6788279  T
Q  110 aattagagaacaatggagcgaagaaaaagatttaa 144  Q
    |||||||||||||| || |||||||||||||||||    
T  6788278 aattagagaacaatagatcgaagaaaaagatttaa 6788244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 268 - 379
Target Start/End: Original strand, 8467036 - 8467147
Alignment:
Q  268 acacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattatgagtgaaagattaaggtttac 367  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||||| | || |||||| |||||||| |||||| | |||||||||| |||||||    
T  8467036 acacaatgtttggtaacgaagttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttac 8467135  T
Q  368 aatgcacaactt 379  Q
    | ||||||||||    
T  8467136 agtgcacaactt 8467147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 50302500 - 50302422
Alignment:
Q  65 tgaaacaagatttgtattactgaatagaga-tgattacaacaacacaattagagaacaatggagcgaagaaaaagattt 142  Q
    |||||||  ||||||||||||||||||||| ||||||||| |||| | |||||||| ||||||| |||||||| |||||    
T  50302500 tgaaacataatttgtattactgaatagagactgattacaataacaaagttagagaaaaatggagagaagaaaaggattt 50302422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 8466882 - 8467021
Alignment:
Q  95 tgattacaacaacacaattagagaacaatggagcgaagaaaaagatttaagaggaatatgactgtttatattggtttccctaccaacgttaacatggcat 194  Q
    |||||||||||||| ||   ||||| ||| ||| |||||||||||||| || ||||| |||| ||||| | ||| |||||| |||| || ||||| |  |    
T  8466882 tgattacaacaacagaa---gagaaaaatagagggaagaaaaagatttgagtggaatgtgacagtttaaaatggattcccttccaatgtaaacattgtgt 8466978  T
Q  195 gttgcccataagtat--gttagaacagcaaacccgttcaaaaa 235  Q
    |||||| |||| |||  |||||||||||||||| |||||||||    
T  8466979 gttgccaataaatatatgttagaacagcaaaccagttcaaaaa 8467021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 41035956 - 41036007
Alignment:
Q  269 cacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgca 320  Q
    |||||||||||||||||||||||| | |||  |||||||||||| |||||||    
T  41035956 cacgatgtttggtaacgaaattcgtccaattgtgcctacgtctcagactgca 41036007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 11484345 - 11484434
Alignment:
Q  257 aaataatgaacacacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattat 346  Q
    |||||||||||||||||||||||||||| || ||| |  ||| |||||||| | ||| ||| ||||||  || | |||||||| ||||||    
T  11484345 aaataatgaacacacgatgtttggtaacaaagttcagtaaattttgcctacatatccaactccaaagcgactacagttcctttgtattat 11484434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 360
Target Start/End: Original strand, 5354180 - 5354275
Alignment:
Q  265 aacacacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattatgagtgaaagattaa 360  Q
    ||||||| ||||||||||||||| |||||| ||| |||||||| |||| |||| |||||||||||  |||||||| ||||||  |||||| |||||    
T  5354180 aacacacaatgtttggtaacgaagttcggccaattttgcctacttctctgactacaaagcagctgtagttcctttgtattatcggtgaaaaattaa 5354275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 28362734 - 28362649
Alignment:
Q  261 aatgaacacacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattat 346  Q
    |||||||||||||||||||||||| || ||   | ||| ||||||| ||||| ||||||| ||||||||| |||||||| ||||||    
T  28362734 aatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagagcagctgcagttcctttgtattat 28362649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 417
Target Start/End: Original strand, 4314182 - 4314290
Alignment:
Q  309 tctccgactgcaaagcagctgctgttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgcataaacactattgtccagattacaa 408  Q
    |||| ||||||| ||||||||| ||||  || |||||| || ||||||||  ||||||||||| | |||||||   |||| ||||  |||||||||||||    
T  4314182 tctctgactgcagagcagctgcagttctgttgtattatcagcgaaagatttgggtttacaatgtagaacttgtatttaaatactacggtccagattacaa 4314281  T
Q  409 catcacccc 417  Q
     || |||||    
T  4314282 tattacccc 4314290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 34564910 - 34564857
Alignment:
Q  265 aacacacgatgtttggtaacgaaattcggctaatattgcctacgtctccgactg 318  Q
    ||||||||||||||||||||||| |||||| ||  |||||||||||||||||||    
T  34564910 aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactg 34564857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 33720255 - 33720155
Alignment:
Q  270 acgatgtttggtaacgaaattcggctaatattgcctacgtctccgactgca----aagcagctgctgttcctttttattatgagtgaaagattaaggttt 365  Q
    |||||||||| ||||||| |||||| ||| |||||||| ||||||||||||     ||||||||| |||||||| ||||||  ||||||| ||| |||||    
T  33720255 acgatgtttgataacgaagttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattatctgtgaaagtttagggttt 33720156  T
Q  366 a 366  Q
    |    
T  33720155 a 33720155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 6683662 - 6683775
Alignment:
Q  261 aatgaacacacgatgtttggtaacgaaattcg----gctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattatgagtgaaaga 356  Q
    ||||||||||| |||||||| ||||||||| |    |||||| |||||||  ||| |||||||| ||||||||| |||||||| ||||||   | |||||    
T  6683662 aatgaacacac-atgtttggaaacgaaatttgatcagctaattttgcctatatcttcgactgcagagcagctgcagttcctttgtattatcgattaaaga 6683760  T
Q  357 ttaaggtttacaatg 371  Q
    ||| |||||||||||    
T  6683761 ttagggtttacaatg 6683775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 48681628 - 48681542
Alignment:
Q  273 atgtttggtaacgaaattcggctaatattgcctacgtctccgactgcaaagcagctgctgttcctttttattatgagtgaaagatta 359  Q
    ||||||||||| ||| |||||| ||| ||| || ||||||||| |||| ||  ||||| |||||||| |||||| |||| |||||||    
T  48681628 atgtttggtaatgaagttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattatcagtggaagatta 48681542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University