View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12149_low_1 (Length: 848)
Name: NF12149_low_1
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 15 - 665
Target Start/End: Original strand, 10239281 - 10239931
Alignment:
| Q |
15 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10239281 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgta |
10239380 |
T |
|
| Q |
115 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239381 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
10239480 |
T |
|
| Q |
215 |
tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10239481 |
tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggta |
10239580 |
T |
|
| Q |
315 |
accagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10239581 |
accagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtca |
10239680 |
T |
|
| Q |
415 |
ccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239681 |
ccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatga |
10239780 |
T |
|
| Q |
515 |
ctttgcattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10239781 |
ctttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaa |
10239880 |
T |
|
| Q |
615 |
gatgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatga |
665 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
10239881 |
ggtgttgatgatgtcatcgagtgtgttgagtattagtgctgagattgatga |
10239931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 665
Target Start/End: Original strand, 10230504 - 10231151
Alignment:
| Q |
18 |
tgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaact |
117 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | | |
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| T |
10230504 |
tgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagt |
10230603 |
T |
|
| Q |
118 |
ttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattat |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| |||| |
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|
| T |
10230604 |
ttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttat |
10230703 |
T |
|
| Q |
218 |
actgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaacc |
317 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| ||| |
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|
| T |
10230704 |
actgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgacc |
10230803 |
T |
|
| Q |
318 |
agcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccg |
417 |
Q |
| |
|
||||| |||||| |||||||| || ||||||| || ||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
10230804 |
agctttgttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccg |
10230903 |
T |
|
| Q |
418 |
tcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactt |
517 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||| |||| | |
|
|
| T |
10230904 |
tcaaagagatggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgatta |
10231003 |
T |
|
| Q |
518 |
tgcattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
10231004 |
cacattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggt |
10231103 |
T |
|
| Q |
618 |
gttgataatgtcatcgagtgtgttgagtattagtgctgatattgatga |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231104 |
gttgataatgtcatcgagtgtgttgagtattagtgctgatattgatga |
10231151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 655
Target Start/End: Complemental strand, 10255324 - 10254684
Alignment:
| Q |
15 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta |
114 |
Q |
| |
|
|||||||||| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
10255324 |
acctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgta |
10255225 |
T |
|
| Q |
115 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
10255224 |
agattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggat |
10255125 |
T |
|
| Q |
215 |
tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggta |
314 |
Q |
| |
|
| || || |||| || ||||||||| | | || || |||||||| || || | |||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
10255124 |
tgtattgtccagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggta |
10255025 |
T |
|
| Q |
315 |
accagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtca |
414 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||| ||| || ||||||||||| ||| |
|
|
| T |
10255024 |
accagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatca |
10254925 |
T |
|
| Q |
415 |
ccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatga |
514 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254924 |
ccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatga |
10254825 |
T |
|
| Q |
515 |
ctttgcattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254824 |
ctttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaa |
10254725 |
T |
|
| Q |
615 |
gatgttgataatgtcatcgagtgtgttgagtattagtgctg |
655 |
Q |
| |
|
| ||||||| ||||| |||| |||||||| || |||||||| |
|
|
| T |
10254724 |
ggtgttgatgatgtcgtcgaatgtgttgaatagtagtgctg |
10254684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 728 - 831
Target Start/End: Original strand, 10231214 - 10231317
Alignment:
| Q |
728 |
caggggaaccggttcttagtgtctcatgaggttgtgatgtttggggtttttcttgggttctgacgaatgctatgttaaattgagggataggaattgtggg |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231214 |
caggggaaccggttcttagtgtctcatgaggttgtgatgtttggggtttttcttgggttctgacgaatgctatgttaaattgagggataggaattgtggg |
10231313 |
T |
|
| Q |
828 |
tggt |
831 |
Q |
| |
|
|||| |
|
|
| T |
10231314 |
tggt |
10231317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 756 - 831
Target Start/End: Original strand, 10240025 - 10240100
Alignment:
| Q |
756 |
aggttgtgatgtttggggtttttcttgggttctgacgaatgctatgttaaattgagggataggaattgtgggtggt |
831 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||| | ||||||||||| |
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|
| T |
10240025 |
aggttgtgatgtttgaggtttttctttggttctgacggatgctgtgttaaattgagggatataagttgtgggtggt |
10240100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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