View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_10 (Length: 380)
Name: NF12149_low_10
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 49684699 - 49684335
Alignment:
| Q |
18 |
atgggaagagattgcatgggaatggttatttgtaaaaataaaattcaaatattgagaaataatttcattttcatcatccccctgtcccttcctttccttc |
117 |
Q |
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| T |
49684699 |
atgggaagagattgcatgggaatggttatttgtaaaaataaaattcaaatattgagaaataatttcattttcatcatcccc--gtcccttcctttccttc |
49684602 |
T |
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| Q |
118 |
tctattctttcccttccatttatccgcctcgtttaggaatatgcgatactaatatgctaaaagaccataacatccattagttttttaggaatat------ |
211 |
Q |
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| T |
49684601 |
tctattctttcccttccatttatccgcctcgtttaggaatatgcgatactaatatgctaaaagaccataacatccattagttttttaggaatatctaata |
49684502 |
T |
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| Q |
212 |
-----ctaaaaaattgcttttctcattcaattgcaatgtaattgtttattttgaatttctcatttattggttcttttgcagacatgagaatgagcttctc |
306 |
Q |
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| T |
49684501 |
gtatgctaaaaaattgcttttctcattcaattgcaatgtaattgtttattttgaatctctcatttattggttcttttgcagacatgagaatgagcttctc |
49684402 |
T |
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| Q |
307 |
caagctgctaatcaaccccttcctgatgacgatgatgatgcttttgagtaaagcttttgtgtctctg |
373 |
Q |
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| T |
49684401 |
caagctgctaatcaaccccttcctgatgacgatgatgatgcttttgagtaaagcttttgtgtctctg |
49684335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 136 - 356
Target Start/End: Complemental strand, 49689967 - 49689735
Alignment:
| Q |
136 |
tttatccgcctcgtttaggaatatgcgatactaatatgctaaaagaccataacatccattagtttttt-aggaatatc-----------taaaaaattgc |
223 |
Q |
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| T |
49689967 |
tttatccgcctcgtttaggaatatgcaatactagtatgctaaaagaccataacatccattagtttttttaggaatatcaaatagtatgctaaaacattgc |
49689868 |
T |
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| Q |
224 |
ttttctcattcaattgcaatgtaattgtttattttgaatttctcatttattggttcttttgcagacatgagaatgagcttctccaagctgctaatcaacc |
323 |
Q |
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| T |
49689867 |
ttttctcattcaattgcagtgtaattgtttatttttaatttctcatttattggttcttttgcagacaagagaatgagcttctccaagctgctaatcaacc |
49689768 |
T |
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| Q |
324 |
ccttcctgatgacgatgatgatgcttttgagta |
356 |
Q |
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| T |
49689767 |
ccttcctgatgacgatgatgatacatttgagta |
49689735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 49690046 - 49689975
Alignment:
| Q |
18 |
atgggaagagattgcatgggaatggttatttgtaaaaataaaattcaaatattgagaaataatttcattttc |
89 |
Q |
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| T |
49690046 |
atgggaagagattgcatgggaatggttatttgcaaaaataaaattcaaacattgagaaattatttcattttc |
49689975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 356
Target Start/End: Complemental strand, 49694702 - 49694598
Alignment:
| Q |
253 |
tattttgaatttctcatttatt-ggttcttttgcagacatgagaatgagcttctccaagctgctaatcaaccccttcctgatgacgatgatgatgctttt |
351 |
Q |
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|||||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || || ||||| ||| |
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| T |
49694702 |
tattttgaatttcttatgtatttggtgcttttgcagacatgagaatgagcttcaacaagctgctaaccaaccacttcctgatgatgacgacgatgcattt |
49694603 |
T |
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| Q |
352 |
gagta |
356 |
Q |
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||||| |
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| T |
49694602 |
gagta |
49694598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 49694887 - 49694823
Alignment:
| Q |
68 |
attgagaaataatttcattttcatcatccccctgtcccttcctttccttctctattctttcccttcc |
134 |
Q |
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|||| ||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||| |
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| T |
49694887 |
attgggaaataatttcattttcatcatccc--tgtccattcctttccttatctagtctttcccttcc |
49694823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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