View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_11 (Length: 242)
Name: NF12149_low_11
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_11 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 538 - 712
Alignment:
| Q |
44 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
143 |
Q |
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| T |
538 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
634 |
T |
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| Q |
144 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcat |
221 |
Q |
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| T |
635 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcat |
712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 8191 - 8365
Alignment:
| Q |
44 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
143 |
Q |
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| T |
8191 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
8287 |
T |
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| Q |
144 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcat |
221 |
Q |
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| T |
8288 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcat |
8365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 6506513 - 6506687
Alignment:
| Q |
44 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
143 |
Q |
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| T |
6506513 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
6506609 |
T |
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| Q |
144 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcat |
221 |
Q |
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| T |
6506610 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcat |
6506687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 6516855 - 6516924
Alignment:
| Q |
77 |
gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaa |
146 |
Q |
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| T |
6516855 |
gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaa |
6516924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 6512451 - 6512538
Alignment:
| Q |
72 |
atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacc |
159 |
Q |
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||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || |||| |||| |
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| T |
6512451 |
atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacc |
6512538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 6522161 - 6522042
Alignment:
| Q |
96 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc |
195 |
Q |
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| T |
6522161 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-ac-----ctattgttacaacaatttgaaatttc |
6522068 |
T |
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| Q |
196 |
tttgatagatttatccaaacattcat |
221 |
Q |
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||||||||||| | ||||||| |||| |
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| T |
6522067 |
tttgatagattgaaccaaacaatcat |
6522042 |
T |
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