View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_13 (Length: 235)
Name: NF12149_low_13
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 42133135 - 42133340
Alignment:
| Q |
15 |
cagagatgttaatacttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133135 |
cagagatgttaatacttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgc |
42133234 |
T |
|
| Q |
115 |
tgttaatattcctggtctgaaagcaccactaacattgtgtagtagtttaagtctatcttcattgattccccgactcttcatttcctgacattataaacaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42133235 |
tgttaatattcctggtctgaaagcaccactaacatcatgtagtagtttaagtctatcttcattgattccctgactcttcatttcctgacattataaacaa |
42133334 |
T |
|
| Q |
215 |
taaaat |
220 |
Q |
| |
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|||||| |
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| T |
42133335 |
taaaat |
42133340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 42154087 - 42154269
Alignment:
| Q |
20 |
atgttaatacttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgtta |
119 |
Q |
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||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
42154087 |
atgttgatatttccttcaatgtatccacctgtttttctgccggctaatacatccatgagggttgtctttccagcaccactaacacctacaagtgctgtta |
42154186 |
T |
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| Q |
120 |
atattcctggtctgaaagcaccactaacattgtgtagtagtttaagtctatcttcattgattccccgactcttcatttcctga |
202 |
Q |
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||||||| ||||| |||||||||||||||| |||||||||| ||| |||| | | ||||||| |||| |||||||||||| |
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| T |
42154187 |
atattcccggtctaaaagcaccactaacatcttgtagtagttgaagcttatccttaatgattccttgacttttcatttcctga |
42154269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 42171937 - 42172124
Alignment:
| Q |
24 |
taatacttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgttaatat |
123 |
Q |
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||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| | ||||||||||||||| |
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| T |
42171937 |
taatatttccttcaatgtatccaccagtttttcttccagctaatacatccatgagtgttgtcttcccagcaccactaacacctacaagtgctgttaatat |
42172036 |
T |
|
| Q |
124 |
tcctggtctgaaagcaccactaacattgtgtagtagtttaagtctatcttcattgattccccgactcttcatttcctgacattataaa |
211 |
Q |
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||||||||| |||||||||||||||| |||||||||| |||| | || | || ||||| ||||||||||||||||| || ||||| |
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| T |
42172037 |
tcctggtctaaaagcaccactaacatcttgtagtagttgaagtttttccttgttcattccatgactcttcatttcctgatatgataaa |
42172124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 42142294 - 42142466
Alignment:
| Q |
30 |
ttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgttaatattcctgg |
129 |
Q |
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||||||| || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
42142294 |
ttccttcgatgtatccacctgtctttcttccagctaatacatccattagggttgtctttccagcaccactaacacctacaagtgctgttaatattcctgg |
42142393 |
T |
|
| Q |
130 |
tctgaaagcaccactaacattgtgtagtagtttaagtctatcttcattgattccccgactcttcatttcctga |
202 |
Q |
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||| |||| ||||||||||| ||||||| || |||| |||| | | | ||||| |||||||||||||||||| |
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| T |
42142394 |
tctaaaagaaccactaacatcttgtagtaattgaagtttatccttaattattcctcgactcttcatttcctga |
42142466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 39622216 - 39622297
Alignment:
| Q |
36 |
caatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgt |
117 |
Q |
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|||||||||| | ||||||||||| |||| ||||||||| || ||||| || ||||||||| | |||||||| || ||||| |
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| T |
39622216 |
caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgt |
39622297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 45156073 - 45156226
Alignment:
| Q |
19 |
gatgttaatacttc-cttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgt |
117 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
45156073 |
gatgttaatactttgcttcaatgtatccacctgtttttcgacaagctaatacatccatgagggttgtctttccagcacc--tgacacccataagtgttgt |
45156170 |
T |
|
| Q |
118 |
taatattcctggtctgaaagcaccactaacattgtgtagtagtttaagtctatctt |
173 |
Q |
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|||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| |
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| T |
45156171 |
taatattcctggtctgaaagcaccgctaacattatgtggtagttgaagtctatctt |
45156226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 2149001 - 2149119
Alignment:
| Q |
30 |
ttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgttaatattcctgg |
129 |
Q |
| |
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|||||||||| ||||||| |||||| |||| ||||| |||||||| | || ||||||||||||||||| |||||||| | ||||||| || ||| || |
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| T |
2149001 |
ttccttcaatgtatccactagtttttattccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctgttagtactccagg |
2149100 |
T |
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| Q |
130 |
tctgaaagcaccactaaca |
148 |
Q |
| |
|
||| ||||||||||||||| |
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| T |
2149101 |
tctaaaagcaccactaaca |
2149119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 2160984 - 2161062
Alignment:
| Q |
30 |
ttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccat |
108 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||| ||||| |||||||| || || |||||||| |||||||| |||||||| |
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| T |
2160984 |
ttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttacacccat |
2161062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 41687776 - 41687893
Alignment:
| Q |
32 |
ccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgttaatattcctggtc |
131 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || | |||||||| || || || |||||||||||| | ||||| | | ||| |||| || ||| || | |
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| T |
41687776 |
ccttcaatataaccaccagtttttcttccagcaagaacatccattagtgtggtttttccagcaccagttacaccaactaatgccgttagtactccaggcc |
41687875 |
T |
|
| Q |
132 |
tgaaagcaccactaacat |
149 |
Q |
| |
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||||||||||||| |||| |
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| T |
41687876 |
tgaaagcaccacttacat |
41687893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 43457685 - 43457762
Alignment:
| Q |
31 |
tccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccat |
108 |
Q |
| |
|
||||||||| || |||||||| || ||||| ||||| |||||||| | |||||||||||||| ||||| || ||||| |
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| T |
43457685 |
tccttcaatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccat |
43457762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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