View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_5 (Length: 428)
Name: NF12149_low_5
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Original strand, 32858479 - 32858885
Alignment:
| Q |
5 |
agcagaacctgtgaagtagataatatctccagctggaagggaaaaatgataatatcttcagcttactgtttagtactcagtggctaccgtcacctatgag |
104 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32858479 |
agcaaaacctttgaagtagataatatctccagctggaagggaaaaatgaaaatatcttcagcttactgtttagcactcagtggctaccgtcacctatgag |
32858578 |
T |
|
| Q |
105 |
accatctccattagcaaggaaattacaatctcttcaaaatatttcatttctttctaaaatattactattcctacaaaacagaaaccacataattaagcaa |
204 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32858579 |
accatctccattagcaaggaaatcacaatctcttcaaaatatttcatttctttctaaaatattactattcctacaaaacagaaaccacataattaagcaa |
32858678 |
T |
|
| Q |
205 |
ggtgaagaaaccctaactaacc-aatagttaactatgacagtggcggaacgatttcacctgtaagaaattcttgatctgcagttatacaccttgcttatt |
303 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32858679 |
ggtgaagaaaccctaactaaccaaatagttaactatgacagtggcggaacgatttcacctgtaagaaattcttgatctgcagttatacaccttgcttatt |
32858778 |
T |
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| Q |
304 |
ttcatgatgagtatgtatgagtgatatattcatatctaaaatctagtattgttgtaaaagttctgcgcttatgaaattacgaatatttgcaggtaacgtt |
403 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32858779 |
ttcatgatgagtatgtatgagtgatatattcctatctaaaatctagtattgttgtaaaagttctgcgcttatgaaattacgaatatttgcaggtaacttt |
32858878 |
T |
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| Q |
404 |
ggtgagt |
410 |
Q |
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||||||| |
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| T |
32858879 |
ggtgagt |
32858885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 32850604 - 32850632
Alignment:
| Q |
22 |
agataatatctccagctggaagggaaaaa |
50 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32850604 |
agataatatctccagctggaagggaaaaa |
32850632 |
T |
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