View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_6 (Length: 423)
Name: NF12149_low_6
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 25 - 403
Target Start/End: Original strand, 49297947 - 49298326
Alignment:
| Q |
25 |
cacgtttgccactagatgtggatcgtatcatatgttctcaaatgatgagaaattagtgggaagattctttctcttcccacatacggtgccaaatgttcct |
124 |
Q |
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| T |
49297947 |
cacgtttgccactggatgtggatcgtatcatatgttctcaaatgatgagaaatcagtgagaagattctttctcttcccacatacggtgccaaatgttcct |
49298046 |
T |
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| Q |
125 |
tctagatgacacctagtgttccggcctttcttcattaacaaatctggaaacaaaagatatgagtttgttttattaaagaagctaaaacttaaaagtaata |
224 |
Q |
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| T |
49298047 |
tctagatgacacctagtgttccggcctttcttcattaacaaatcaggaaacaaaagatatgagtgtgttttattaaagaagctaaaacttaaaagtaata |
49298146 |
T |
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| Q |
225 |
attaag-nnnnnnnntaatcacatggattgccgttgccgtttatagagatataccaagacattgaatttcttccttattccgtgcaaaacttccctgttt |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49298147 |
attaagaaaaaaaaataatcacatggattgccgttgccgtttatagagatataccaagacattgaatttcttccttattccgtgcaaaacttccctgttt |
49298246 |
T |
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| Q |
324 |
tgggcgggaaatcaagttaatacctttttcgtttttgatcatgatcctcacgcggttaagagagtcatttcaataacatt |
403 |
Q |
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| T |
49298247 |
tgggcgggaaatcaagttaatacctttttcgttttcgatcatgatcctcacgcggttaagagagtcatttcaattacatt |
49298326 |
T |
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