View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_7 (Length: 412)
Name: NF12149_low_7
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 123 - 396
Target Start/End: Complemental strand, 36935772 - 36935496
Alignment:
| Q |
123 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacac---cttgatcagg |
219 |
Q |
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| T |
36935772 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacacgaccttgatcagg |
36935673 |
T |
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| Q |
220 |
tttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaagcacatat |
319 |
Q |
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| T |
36935672 |
tttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaagaagcacatat |
36935573 |
T |
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| Q |
320 |
aacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataac |
396 |
Q |
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| T |
36935572 |
aacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataac |
36935496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 204 - 396
Target Start/End: Complemental strand, 36956542 - 36956350
Alignment:
| Q |
204 |
taacaccttgatcaggtttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaag |
303 |
Q |
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| T |
36956542 |
taacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaag |
36956443 |
T |
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| Q |
304 |
gaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataac |
396 |
Q |
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| T |
36956442 |
gaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataac |
36956350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 36935839 - 36935780
Alignment:
| Q |
14 |
tgattgccattttattggtcatacaacaagaagaacatacatatttagtcaaaataggca |
73 |
Q |
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| T |
36935839 |
tgattgccattttattggtcatacaacaagaagaacatacatatttagtcaaaataggca |
36935780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 36948407 - 36948274
Alignment:
| Q |
263 |
gaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaa |
362 |
Q |
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| T |
36948407 |
gaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaatcaatgtcataaccagaa |
36948308 |
T |
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| Q |
363 |
acacattggacaaccaacgtagttcactgataac |
396 |
Q |
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| T |
36948307 |
acacatttgccaaccaagtaagttcactgataac |
36948274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 212 - 396
Target Start/End: Original strand, 12493290 - 12493474
Alignment:
| Q |
212 |
tgatcaggtttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaa |
311 |
Q |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
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| Q |
312 |
gcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataac |
396 |
Q |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataac |
12493474 |
T |
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