View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12149_low_9 (Length: 388)
Name: NF12149_low_9
Description: NF12149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12149_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 32345269 - 32344939
Alignment:
| Q |
19 |
gaatagtcttcacctaataaattgattttatgaagttgctcaacccaaattctaaaaaccacattcacgtccttttggtatctgtctgtttccatgtgaa |
118 |
Q |
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| T |
32345269 |
gaatagtcttcacctaataaattgattttatgaagttgctcaacccaaattctaaaaaccacattcacgtccttttggtatctgt----ttccatgtgaa |
32345174 |
T |
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| Q |
119 |
tcgtaattatatttgatgtatgtgaatgtgagaacctaatggaggaaataaaatagctatttgaatttaaaaatttgctgtgccaaaaaactatattaaa |
218 |
Q |
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| T |
32345173 |
tcgtaattatatttgatgtatgtgaatgtgagaacctaatggaggaaataaaatagctatttgaatttaaaaaatttctgtgccaaaaaactatattaaa |
32345074 |
T |
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| Q |
219 |
acgtgcttgcaagtttgaattgaaaatgtatggttttcaagtcaatagattttccaattatgtaccctccgaaataatttgaagtgcttcaaatatcaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32345073 |
acgtgcttgcaagtttgaattgaaaatgtatggttttcaagtcaatagattttccaattatgtaccctccgaaataatttgaagtgctttaaatatcaag |
32344974 |
T |
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| Q |
319 |
ttaatgtagtttannnnnnnactctagaactagat |
353 |
Q |
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| T |
32344973 |
ttaatgtagtttattttttcactctagaactagat |
32344939 |
T |
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