View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12150_high_2 (Length: 451)
Name: NF12150_high_2
Description: NF12150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12150_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 43162365 - 43161943
Alignment:
| Q |
11 |
cacagaagtcatgaaatcactatcaagatatataattatggaagaaaaaatacaaaaaatgataatgattaatcatgttaatagtaataatg--agnnnn |
108 |
Q |
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| T |
43162365 |
cacagaagtcatgaaatcactatcaagatatataattatggaagaaaaaatacaaaaaatgataatgattaatcatgttaatagaaataatgggagaaaa |
43162266 |
T |
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| Q |
109 |
nnnnnntgtgattttaattactgcatgttaacgttatttataaagctgccatgcagtggtcacaagctaaactataatttaagtatccttttgtattgtc |
208 |
Q |
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| T |
43162265 |
aaaaaatgtgattttaattactgcatgttaacgttatttataaagctgccatgcagtggtcacaagctaaactataatttaagtatccttttgtattgtc |
43162166 |
T |
|
| Q |
209 |
ctgttatgtgcttattattattacttatcctacattgtccnnnnnnnnnaaaagagtgataaagatggaagtggtgcttggatttttggagaaacatgca |
308 |
Q |
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| T |
43162165 |
ctgttatgtgcttattatta---cttatcctacattgtccttatttttgaaaagagtgataaagatggaagtggtgcttggatttttggagaaacatgca |
43162069 |
T |
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| Q |
309 |
atatgccaacatgtgacagaaaagaagaatctagtatgaaaacagaaagagataatggcaacatgaaatgtcatcctcacttgaaccaactttggtagtt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162068 |
atatgccaacatgtgacagaaaagaagaatctagtatgaaaacagaaagagataatggcaacatgaaatgtcatcctcacttgaaccaactttggtagtt |
43161969 |
T |
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| Q |
409 |
gatcggttgaaatggggcaggaaagg |
434 |
Q |
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| T |
43161968 |
gatcggttgaaatggggcaggaaagg |
43161943 |
T |
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