View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12150_high_3 (Length: 408)
Name: NF12150_high_3
Description: NF12150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12150_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 175445 - 175821
Alignment:
| Q |
15 |
tgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattccttt |
114 |
Q |
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| T |
175445 |
tgctctgctatctctcgatctgctgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattccttt |
175544 |
T |
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| Q |
115 |
atttctgatcccaaattcgccaatgatcaccttcgcttgtcaaagatccaccaccgccaccacaacctcctcataagcccgtgggctttcttttcagaag |
214 |
Q |
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| T |
175545 |
atttctgatcccaaattcgccaatgatcaccttcgcttgtcaaagatccaccgccgccaccacaacctcctcataagcccgtgggctttcttttcagaag |
175644 |
T |
|
| Q |
215 |
ggaacttctctctccttgattcccgacttacttctgtttttaacaacaacaactcaacaaccatcgtccctgatatgaagctcaactttcctctaaatcc |
314 |
Q |
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| T |
175645 |
gaaacttctctctccttgattcccgacttacttctgtttttaacaacaacaactcaacaaccatcgtccctgatatgaagctcaactttcctctaaatcc |
175744 |
T |
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| Q |
315 |
ttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttc-aaccatcgatgacagattcgact |
390 |
Q |
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| T |
175745 |
ttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaaaccatcgatgacagattcgact |
175821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 371628 - 371535
Alignment:
| Q |
67 |
aagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtcaaaga |
160 |
Q |
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| T |
371628 |
aagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattatttccgatcctaaattcgccaaagatcactttcgcttgtcaaaga |
371535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 1471798 - 1471673
Alignment:
| Q |
29 |
tcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaa |
128 |
Q |
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| T |
1471798 |
tcgatctggtgctagaaattctgtatggtctccctgtgaaatcactcttgacactcaagtgtgtttccaagcccttgaatttcttaatttctgatcccaa |
1471699 |
T |
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| Q |
129 |
attcgccaatgatcaccttcgcttgt |
154 |
Q |
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| T |
1471698 |
atttgccaaaggtcaccttcgcttgt |
1471673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 1460408 - 1460283
Alignment:
| Q |
31 |
gatctggtgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaat |
130 |
Q |
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| T |
1460408 |
gatctagtgttagaaattttgtacggtctccctgtgaaatcactcttgacactcaagtgtgtttccaagcccttgaattctttaatttctgatcctaaat |
1460309 |
T |
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| Q |
131 |
tcgccaatgatcaccttcgcttgtca |
156 |
Q |
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| T |
1460308 |
tttccaaagatcaccttcgcttgtca |
1460283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 1442994 - 1442853
Alignment:
| Q |
15 |
tgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattccttt |
114 |
Q |
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||||||| |||| || ||||||||||||||||| | |||||| |||| | ||||| || ||||||||||| | |||| ||| | || | |||| || |
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| T |
1442994 |
tgctctgttatcacttgatctggtgttagaaatcttttacaggctccctttgaagtcgctattgacactcaagtaagtctgcaagctcttgatttccatt |
1442895 |
T |
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| Q |
115 |
atttctgatcccaaattcgccaatgatcaccttcgcttgtca |
156 |
Q |
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||||||||||| || ||| |||| |||||||||||||||||| |
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| T |
1442894 |
atttctgatcctaacttcaccaaagatcaccttcgcttgtca |
1442853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 55418944 - 55419058
Alignment:
| Q |
38 |
tgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaa |
137 |
Q |
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| T |
55418944 |
tgttagaaatcctgtataggcttcctgtgaagtcactcatgatactcaagtgtgtttgcaagcccttgaatgccttaatttctgatcccatatttgccaa |
55419043 |
T |
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| Q |
138 |
tgatcaccttcgctt |
152 |
Q |
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| T |
55419044 |
agatcacattcgctt |
55419058 |
T |
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