View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12151_low_1 (Length: 443)
Name: NF12151_low_1
Description: NF12151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12151_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 428
Target Start/End: Complemental strand, 6047474 - 6047070
Alignment:
| Q |
23 |
catgtctacctcttcgaaaaagtacgatgtgttcatcagttttaggggccaagacacacgtgaaacattcacaagccatcttcattatgctctctgcaag |
122 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |
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| T |
6047474 |
catgtccacctcttcgaaaaagtacgatgtgttcatcagtttcaggggccaagacacgcgtgaaacattcacaagccatcttcattatgctttatgcaag |
6047375 |
T |
|
| Q |
123 |
gaaaatatcatagcatacattgatgataatcttgtaaagggagatgatattggtgaagcacttgctgaagcaatccaagactcacgcatatctctcgttg |
222 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6047374 |
gaaaatatcataacatacattgatgataatcttgtgaagggagatgaaattggtgaagcacttgctgaagcaatccaagactcacgcatatctcttgttg |
6047275 |
T |
|
| Q |
223 |
tattctccaaaaattatgcaacctcaaagtggtgcttgaatgaactactcaaaatacttgaatgcgaaaaactttatggtcaagtagttataccatgtgt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||| ||||| |
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| T |
6047274 |
tattctccaaaaattatgcaacctcaaagtggtgcttgaatgaactcctcaaaatacttgaatgcaaaaaacttcatggtcaagttgttatacc-tgtgt |
6047176 |
T |
|
| Q |
323 |
tctataagacaggtacatcagaagtacgtaatcaaacagggagttacgagaaaccgttctcacactatgagatagaagccatcaacaatgaatccttcgc |
422 |
Q |
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| T |
6047175 |
tctataacacaggtacatcagaagtacgtaatcaaacagggagttacgagaaaccgttctcacactatgagatagaagccatcaacaacgaatcctttgc |
6047076 |
T |
|
| Q |
423 |
aaacac |
428 |
Q |
| |
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|||||| |
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| T |
6047075 |
aaacac |
6047070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 328
Target Start/End: Complemental strand, 6098038 - 6097831
Alignment:
| Q |
120 |
aaggaaaatatcatagcatacattgatgataatcttgtaaagggagatgatattggtgaagcacttgctgaagcaatccaagactcacgcatatctctcg |
219 |
Q |
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||||||||||||||| |||||||||| || |||||| || ||||| || ||||| |||||||| | ||||||||||||| ||||| || ||||||| |
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| T |
6098038 |
aaggaaaatatcataacatacattgacgagaatcttaacaaaggagaagaggttggtccagcacttgttcaagcaatccaagaatcacgtatgtctctcg |
6097939 |
T |
|
| Q |
220 |
ttgtattctccaaaaattatgcaacctcaaagtggtgcttgaatgaactactcaaaatacttgaatgcgaaaaactttatggtcaagtagttataccatg |
319 |
Q |
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| T |
6097938 |
tggttttctcagaaaactatgcttcctcaaaatggtgtttggatgaactcctcaaaatactcgaatgtggaaaatttcatgatcaagtggttatacc-tg |
6097840 |
T |
|
| Q |
320 |
tgttctata |
328 |
Q |
| |
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||||||||| |
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| T |
6097839 |
tgttctata |
6097831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 6179945 - 6179800
Alignment:
| Q |
183 |
cttgctgaagcaatccaagactcacgcatatctctcgttgtattctccaaaaattatgcaacctcaaagtggtgcttgaatgaactactcaaaatacttg |
282 |
Q |
| |
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|||||| ||||||||||||| |||| || ||||| || || ||||| |||| |||||||||||||||||||||||| ||||||| ||| | ||||| |
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| T |
6179945 |
cttgctaaagcaatccaagattcacatatgtctcttgtagttttctcagaaaactatgcaacctcaaagtggtgcttggatgaactcctccatatactac |
6179846 |
T |
|
| Q |
283 |
aatgcgaaaaactttatggtcaagtagttataccatgtgttctataa |
329 |
Q |
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||||| ||||| | ||||||| ||||| ||||| |||||||||||| |
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| T |
6179845 |
aatgcagaaaacatcatggtcaggtagtaatacc-tgtgttctataa |
6179800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 6188665 - 6188574
Alignment:
| Q |
237 |
tatgcaacctcaaagtggtgcttgaatgaactactcaaaatacttgaatgcgaaaaactttatggtcaagtagttataccatgtgttctataa |
329 |
Q |
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|||||||| ||||||||||||||| ||||||| || | |||||| ||||| ||||||| |||| || ||||||||||| |||||||||||| |
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| T |
6188665 |
tatgcaacttcaaagtggtgcttggatgaactcgtccacatacttcaatgcagaaaacttaatggacatgtagttatacc-tgtgttctataa |
6188574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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