View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12151_low_3 (Length: 285)
Name: NF12151_low_3
Description: NF12151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12151_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 27724984 - 27724724
Alignment:
| Q |
11 |
cacagatagcatcaagggtcttatcaatctgcgtcttaagaaatatattcggagcacgattggaatccctaagccagtaatgcccaaccatacgcccttc |
110 |
Q |
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| T |
27724984 |
cacaaatagcatcaagggtcttatcaatctgcgtcttaagaaatatattcggagcacgattggaatccctaagccagtaatgcccaaccatacgcccttc |
27724885 |
T |
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| Q |
111 |
atcaggattcgcaatcgctcccttttcaagctcctccatagctttcaacgccgcctgaaacctcggctccatttccttcacaaactcatcggtaaacccg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27724884 |
atcaggattcgcaatcgctcccttttcaagctcctccatagctttcaacgccgcctgaaacctcggctccatttccttcacaaactcatcggtaaacccg |
27724785 |
T |
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| Q |
211 |
acccggctcacatccagatacaaaccaatctccttgtgctggtatagccggtccacgtaac |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27724784 |
acccggctcacatccagatacaaaccaatctccttgtgctggtatagccagtccacgtaac |
27724724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 6048715 - 6048890
Alignment:
| Q |
95 |
caaccatacgcccttcatcaggattcgcaatcgctcccttttcaagctcctccatagctttcaacgccgcctgaaacctcggctccatttccttcacaaa |
194 |
Q |
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|||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| || | | |||||||||||||||||||||||| ||||||||| |
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| T |
6048715 |
caaccatacgccgttcaccaggattcgcaatcgctcctttttcaagctcctccatagccttaagctccgcctgaaacctcggctccatttacttcacaaa |
6048814 |
T |
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| Q |
195 |
ctcatcggtaaacccgacccggctcacatccagatacaaaccaatctccttgtgctggtatagccggtccacgtaac |
271 |
Q |
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| T |
6048815 |
ctcatcggt-aacccgacccggctcacatccagatacagaccaatctccttgtgctgatatagccagtccacgtaac |
6048890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 49895842 - 49896005
Alignment:
| Q |
108 |
ttcatcaggattcgcaatcgctcccttttcaagctcctccatagctttcaacgccgcctgaaacctcggctccatttccttcacaaactcatcggtaaac |
207 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| || | | | |||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
49895842 |
ttcatcaggatttgcaatcgctcctttttcaagctcctccatagccttaatctctgcctgaaacctcgggtccatttacttcacaaactcatcagtaaac |
49895941 |
T |
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| Q |
208 |
ccgacccggctcacatccagatacaaaccaatctccttgtgctggtatagccggtccacgtaac |
271 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||| |
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| T |
49895942 |
ccgacccggctcacatccagatacagaccaaattccttgtgctgatatagccagtccacgtaac |
49896005 |
T |
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