View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12152_high_2 (Length: 381)
Name: NF12152_high_2
Description: NF12152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12152_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 355
Target Start/End: Complemental strand, 4761659 - 4761328
Alignment:
| Q |
22 |
ggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatt |
121 |
Q |
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| T |
4761659 |
ggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatt |
4761560 |
T |
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| Q |
122 |
tcaattgcgtgtatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaacaaac |
221 |
Q |
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| T |
4761559 |
tcaattgcgtgtatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaataaac |
4761462 |
T |
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| Q |
222 |
cccgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataa |
321 |
Q |
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| T |
4761461 |
cctgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataa |
4761362 |
T |
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| Q |
322 |
taagaaaaatggttctggttccacttagtcatga |
355 |
Q |
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| T |
4761361 |
taagaaaaatgattctggttccacttagtcatga |
4761328 |
T |
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