View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12152_high_3 (Length: 375)
Name: NF12152_high_3
Description: NF12152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12152_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 7502429 - 7502746
Alignment:
| Q |
30 |
acctccattagcaaatatcaacaaaacattagcattagggttatctagagcccacagtgacatatcagtaataatctttttgtaacattcatcaaagtaa |
129 |
Q |
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| T |
7502429 |
acctccattagcaaatatcaacaaaacattagcattagggttacctagagcccacagtgacatatcagtaataatctttttgtaacattcatcaaagtaa |
7502528 |
T |
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| Q |
130 |
ctatcagagacgctagtgacgtgatggacggagatgcctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaa |
229 |
Q |
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| T |
7502529 |
ctatcagagacgctagtgacgtgatggacggagatgcctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaa |
7502628 |
T |
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| Q |
230 |
tggaaagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgtt |
329 |
Q |
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| T |
7502629 |
tggaaagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgtt |
7502728 |
T |
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| Q |
330 |
aatgttccaccaaactga |
347 |
Q |
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| T |
7502729 |
aatgttccaccaaactga |
7502746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 166 - 347
Target Start/End: Original strand, 7499231 - 7499412
Alignment:
| Q |
166 |
cctgtggaggaaagcgcgtttagaatttcactggcgatgagattggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcgacagag |
265 |
Q |
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| T |
7499231 |
cctgtggaggaaataccgtttagaatttcactggagatgagattggtgtctccataagccgtaatggaaatttcgccatgaagtttggctttcaacagga |
7499330 |
T |
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| Q |
266 |
ctaagcgaatgttgttagcaatggttttaacatactcggggtttgttggaaatttacagtcgttaatgttccaccaaactga |
347 |
Q |
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| T |
7499331 |
ctaagggaatgttgttagaaatgttggtaacgctctcgaggtttgttggaactttacagtcatcaatgttccaccaaactga |
7499412 |
T |
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