View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12152_high_4 (Length: 360)
Name: NF12152_high_4
Description: NF12152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12152_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 37219410 - 37219061
Alignment:
| Q |
1 |
aaaaccacacgatcatgaattgaatgtcaatagagaatgtacttcgagcaacaaggagcaagctgatg---tctcacatgaagtgaaattcaaaaatgat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37219410 |
aaaaccacacgatcatgaattgaatgtcaatagagaatgtactttgagcaacaaggagcaagctgatgatgtctcacatgaagtgaaattcaaaaatgat |
37219311 |
T |
|
| Q |
98 |
attttcagcagaaaatgtcttttagtttcaaatgggtttgaaccattccatgcctcaattacacagcctcatttttcaaatatgctatgcaacaatgtgg |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219310 |
attttcagcagaaaatgtattttagtttcaaatgggtttgaaccattccatgcctcaattacacagcctcatttttcaaatatgctatgcaacaatgtgg |
37219211 |
T |
|
| Q |
198 |
ccaatacttctccaacattaacaaacacgtaagtagattcaataccatttgtcaaaagatattaaaatttaattatgtcaaatttatgacttgagtttca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219210 |
ccaatacttctccaacattaacaaacacgtaagtagattcaataccatttgtcaaaagaaattaaaatttaattatgtcaaatttatgacttgagtttca |
37219111 |
T |
|
| Q |
298 |
tctgtcaaatttcagggatgaaactccttttatgaccaatgccacagaat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219110 |
tctgtcaaatttcagggatgaaactccttttatgaccaatgccacagaat |
37219061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University