View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12152_high_6 (Length: 351)
Name: NF12152_high_6
Description: NF12152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12152_high_6 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 95 - 351
Target Start/End: Complemental strand, 32971876 - 32971620
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32971876 |
atgaatgggaggaccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
32971777 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacgatatctttt |
294 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32971776 |
gtcggacacgactcataaaacatcatctcatttcccatgatacatccaatattagctaacgtatcagcgcacctatttgcttcacgatacaatatctttt |
32971677 |
T |
|
| Q |
295 |
gaaaagtttgaagacataaatatgataaaaccaaccaacagatggacgatcactgca |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32971676 |
gaaaagtttgaagacataaatatgataaaaccaaccaacagatggacgatcactgca |
32971620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 28574730 - 28574921
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
28574730 |
atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
28574829 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
28574830 |
gtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcacctatttgcttcacgatacga |
28574921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 5472258 - 5472115
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaaccc-ccgcttgatcagcagttaacaaatagttaatttg |
193 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| | ||||||||||| || |||||||| ||||||||| |
|
|
| T |
5472258 |
atgaaagggagggccgaaatccgaaaaaagaaattacatcttaatcaagcgcggaaaagtaaatctccgcttgatcaacaactaacaaatggttaatttg |
5472159 |
T |
|
| Q |
194 |
agtcggacatgactcataaaacatcatctcatttcccatgatac |
237 |
Q |
| |
|
||| || || ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
5472158 |
agttgggcacgactcataatacatcatctcattccccatgatac |
5472115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 38658047 - 38658145
Alignment:
| Q |
118 |
gaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttgagtcggacatgactcataaaaca |
216 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||| || || | |||||||||| ||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
38658047 |
gaaagagaaattacatcttaatcaaacgcggaaaagaaatccatgtttgatcagcaattaacaaatgactaatttgagtcggacaaaactcgtaaaaca |
38658145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 46265061 - 46265108
Alignment:
| Q |
291 |
ttttgaaaagtttgaagacataaatatgataaaaccaaccaacagatg |
338 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
46265061 |
ttttcaaaagtttgaaggcataaatatgataaaactaaccaatagatg |
46265108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 20632922 - 20633113
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
20632922 |
atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
20633021 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
20633022 |
gtcggtcacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcacctatttgcttcacgatacga |
20633113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 48822953 - 48823144
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
48822953 |
atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagtgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
48823052 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
48823053 |
gtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcacctatttgcttcacgatacga |
48823144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 95 - 285
Target Start/End: Original strand, 11691880 - 11692070
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
11691880 |
atgaaagggagagccgaagcccggaaaaagaaattacgtcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
11691979 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacg |
285 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
11691980 |
gtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcacctatttgcttcacgatacg |
11692070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 10448900 - 10449039
Alignment:
| Q |
147 |
ggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttgagtcggacatgactcataaaacatcatctcatttcccatgatacttccaatat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
10448900 |
ggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcagacacgactcataaaacatcatctcattccccatgatacatccaatat |
10448999 |
T |
|
| Q |
247 |
tagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
10449000 |
tagctaacgcatcagcgcacctatttgcttcacgatacga |
10449039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 16237714 - 16237523
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
16237714 |
atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
16237615 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
16237614 |
gtcggacacgactcataaaacatcatcccattctccatgatacatccaatattagctaacgcatcagcgcacctatttgcttcacgatacga |
16237523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 278
Target Start/End: Complemental strand, 32407874 - 32407691
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
32407874 |
atgaaagggagggcctaagcccggaaaaagaaattacatcttaatcaaacgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
32407775 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttca |
278 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||| |||||| |||| |
|
|
| T |
32407774 |
gtcggacacaacttataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcacttatttgtttca |
32407691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 11169024 - 11168963
Alignment:
| Q |
164 |
ttgatcagcagttaacaaatagttaatttgagtcggacatgactcataaaacatcatctcat |
225 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
11169024 |
ttgatcagcagcaaacaaatgactaatttgtgtcggacaagattcataaaacatcatctcat |
11168963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 29752211 - 29752401
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
29752211 |
atgaaagggagggccgaagcccggaaaaagaaattatatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
29752310 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
29752311 |
gtcggacacgactcataaaacatcatctcattccccatgatac-accaatattagctaacgcatcagcgcacctatttgcttcacgatacga |
29752401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 38833023 - 38833211
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
38833023 |
atgaaagggagggccgaagctcggaa---gaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
38833119 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||| |||||||| ||||||| |
|
|
| T |
38833120 |
gtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcacctagttgcttcacgatacga |
38833211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 18185773 - 18185589
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||| ||| |||||||| |||||||||| |
|
|
| T |
18185773 |
atgaaagggagggccgaagcccggaaaaagaaattacatcttaataaagcacggaaaaataacccccgtctgatcaacagctaacaaatggttaatttga |
18185674 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacg |
285 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
18185673 |
gtc------gactcataaaatatcatctcattccccatgatacatccaatattagctaacgcatcagcgcacctatttgcttcacgatacg |
18185589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 24323377 - 24323568
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
24323377 |
atgaaagggagggccgaagcccgaaaaaagaaattatatcttaatcaagcgccgaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga |
24323476 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| | ||||||||||||||| ||||||| |
|
|
| T |
24323477 |
gtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcacacctatttgcttcacgatacga |
24323568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 36123688 - 36123871
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||| ||||| || |||||||||| |
|
|
| T |
36123688 |
atgaaagggagggccgaaacccggaaaaagaaattaaatcttaatcaaatgcggaaaagtaaccctcgcttgatcagcagctaacacatggttaatttga |
36123787 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttccc--atgatacttccaatattagctaacgtatcaacgcacctatttgctt |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
36123788 |
gtcggacacgactcataaaacatcatctcattccccatatgatacatccaatattagctagcgcatcagcgcacctatttgctt |
36123871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 40342801 - 40342706
Alignment:
| Q |
123 |
agaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttgagtcggacatgactcataaaacatc |
218 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||| ||| ||||||||||||||||| |||||||||||||| | || |||||||||||| |
|
|
| T |
40342801 |
agaaattacatcttaatcaaacgcaaaaaagaaatcccttcttaatcagcagttaacaaatgactaatttgagtcggataagagtcataaaacatc |
40342706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 39181045 - 39180854
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||||| |||||||| |||||||||| |
|
|
| T |
39181045 |
atgaaaggaagggccgaagcccggaaaaagaaattacatcttaatcaagtgcggaaaagtaactctcgcttgatcagcagctaacaaatggttaatttga |
39180946 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
39180945 |
gtcggacatgactcataaaacatcatctcattcctcatgatacatctaatattagctaacgcatcagcgcacctatttgcttcacgatacga |
39180854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 18569150 - 18568958
Alignment:
| Q |
95 |
atgaatgggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga |
194 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| | || |||||||| | |||||| | |
|
|
| T |
18569150 |
atgaaagggagggatgaaacccggaaaaagaaattagatcataatcaagcgtggaaaagtaacctttgcttgataaacatctaacaaatggctaatttaa |
18569051 |
T |
|
| Q |
195 |
gtcggacatgactcataaaacatcatctcattt-cccatgatacttccaatattagctaacgtatcaacgcacctatttgcttcatgatacga |
286 |
Q |
| |
|
||| |||| ||||||||| |||| ||||||||| ||||||| || ||||||||||||||| | |||| || || |||||| |||| ||||||| |
|
|
| T |
18569050 |
gtcagacacgactcataatacataatctcatttccccatgaaacatccaatattagctaatgcatcagcgtacgtatttgtttcacgatacga |
18568958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 2091049 - 2091135
Alignment:
| Q |
176 |
taacaaatagttaatttgagtcggacatgactcataaaacatcatctcatttcccatgatacttccaatattagctaacgtatcaac |
262 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||| | |||||| |
|
|
| T |
2091049 |
taacaaatgattaatttgagtcggacaagactcataaaacatcatctcataccccattctacacccaatattagctaaagcatcaac |
2091135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 1209024 - 1208964
Alignment:
| Q |
285 |
gatatcttttgaaaagtttgaagacataaatatgataaaaccaaccaacagatggacgatc |
345 |
Q |
| |
|
||||| |||| |||| ||||||| || ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
1209024 |
gatatattttcaaaattttgaaggcacaaacatgataaaactaaccaacagatggacgatc |
1208964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 5699804 - 5699691
Alignment:
| Q |
101 |
gggagggccgaagcccggaaaaagaaattacatcttaatcaagcgtggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttgagtcgga |
200 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
5699804 |
gggagggccgaagctcaaaaagagaaattacatcttaatcaaacacataaaagaaacccctgcttgatcagcagctaacaaatgactaatttgagtcgga |
5699705 |
T |
|
| Q |
201 |
catgactcataaaa |
214 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
5699704 |
caagactcataaaa |
5699691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 14138002 - 14137924
Alignment:
| Q |
148 |
gaaaagtaacccccgcttgatcagcagttaacaaatagttaatttgagtcggacatgactcataaaacatcatctcatt |
226 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||| | |||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
14138002 |
gaaaagtaacccccgcttaatcatcaactaacaaatgacttatttaagtcgaacatgactcataaaacgtcatctcatt |
14137924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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