View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12152_low_1 (Length: 353)
Name: NF12152_low_1
Description: NF12152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12152_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 28064596 - 28064263
Alignment:
| Q |
19 |
gcccatcctctcttttgcaactctagtcgcaacgcctgtcatatagtcaaaaatctcgattgttagatcacgatcatatgatttatattttaatatatat |
118 |
Q |
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| T |
28064596 |
gcccatcctctcttttgcaactctagtcgcaacgcctgtcacatagtcaaaaatctcgattgttagatcacgatcatatgatttatattttaatatatat |
28064497 |
T |
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| Q |
119 |
gttaaagttgatttaatgaaattaaaatacaaatagtcagatcttatccaacgatcgaggatcactacatagctacaactatgtacttaggctatagaca |
218 |
Q |
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| T |
28064496 |
gttaaagttgatttaatgaaattaaaatacgagtagtctgatcttttccaacgattgaggatcactacatagctacaac-atgtacttaggctatagaca |
28064398 |
T |
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| Q |
219 |
atcttgatcagtagacacacacataagtcacaatgagattgtaccttgatccttcttctattcacatcaaaatcaaaattcccaacccttgatgctgatc |
318 |
Q |
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| T |
28064397 |
atcttgatctgtagacacacacataagtcacaatgagattgtaccttgattcttcttctattcacatcaaaatcaaaattcccaacccttgctgctgatc |
28064298 |
T |
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| Q |
319 |
gatactcaacaattgagtccttatcttgtggaaac |
353 |
Q |
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| T |
28064297 |
gatactcaacaattgagtccttatcttgtggaaac |
28064263 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 7968683 - 7968764
Alignment:
| Q |
260 |
taccttgatccttcttctattcacatcaaaatcaaaattcccaacccttgatgctgatcgatactcaacaattgagtcctta |
341 |
Q |
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| T |
7968683 |
tacctttattctttttctattcacatcaaaatcaaagtttcccaaccttgacgcagatcgatactccacgattgagccctta |
7968764 |
T |
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